Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 FEM1AP3-201ENST00000403722 1741 ntBASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMD1Q9UGP4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 FGFR3P6-201ENST00000457012 610 ntBASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 AL139424.1-201ENST00000607572 797 ntBASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMD1Q9UGP4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMD1Q9UGP4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 PGAM5P1-201ENST00000518923 814 ntBASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 AC012183.1-201ENST00000625197 499 ntBASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 AC120498.9-201ENST00000339021 3867 ntBASIC18.96■□□□□ 0.63
LIMD1Q9UGP4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms