Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.13■□□□□ 0.17
MMP28Q9H239 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
MMP28Q9H239 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
MMP28Q9H239 AL596257.1-201ENST00000641463 2694 ntBASIC16.12■□□□□ 0.17
MMP28Q9H239 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
MMP28Q9H239 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.12■□□□□ 0.17
MMP28Q9H239 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
MMP28Q9H239 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
MMP28Q9H239 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
MMP28Q9H239 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
MMP28Q9H239 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC16.12■□□□□ 0.17
MMP28Q9H239 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
MMP28Q9H239 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.12■□□□□ 0.17
MMP28Q9H239 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.12■□□□□ 0.17
MMP28Q9H239 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.12■□□□□ 0.17
MMP28Q9H239 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.12■□□□□ 0.17
MMP28Q9H239 AC120498.8-201ENST00000614275 531 ntBASIC16.12■□□□□ 0.17
MMP28Q9H239 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.12■□□□□ 0.17
MMP28Q9H239 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
MMP28Q9H239 AC116351.2-201ENST00000606540 1585 ntBASIC16.12■□□□□ 0.17
MMP28Q9H239 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.12■□□□□ 0.17
MMP28Q9H239 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.12■□□□□ 0.17
MMP28Q9H239 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
MMP28Q9H239 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
MMP28Q9H239 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
MMP28Q9H239 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.11■□□□□ 0.17
MMP28Q9H239 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.11■□□□□ 0.17
MMP28Q9H239 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC16.11■□□□□ 0.17
MMP28Q9H239 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
MMP28Q9H239 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.11■□□□□ 0.17
MMP28Q9H239 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
MMP28Q9H239 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
MMP28Q9H239 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
MMP28Q9H239 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
MMP28Q9H239 AC018553.1-201ENST00000616682 1458 ntBASIC16.11■□□□□ 0.17
MMP28Q9H239 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.11■□□□□ 0.17
MMP28Q9H239 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
MMP28Q9H239 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC16.11■□□□□ 0.17
MMP28Q9H239 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.11■□□□□ 0.17
MMP28Q9H239 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
MMP28Q9H239 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.11■□□□□ 0.17
MMP28Q9H239 AL121906.2-201ENST00000621597 723 ntBASIC16.11■□□□□ 0.17
MMP28Q9H239 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC16.11■□□□□ 0.17
MMP28Q9H239 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.11■□□□□ 0.17
MMP28Q9H239 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.11■□□□□ 0.17
MMP28Q9H239 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MMP28Q9H239 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC16.11■□□□□ 0.17
MMP28Q9H239 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.1■□□□□ 0.17
MMP28Q9H239 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 AC124283.5-201ENST00000624661 1809 ntBASIC16.1■□□□□ 0.17
MMP28Q9H239 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.1■□□□□ 0.17
MMP28Q9H239 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.1■□□□□ 0.17
MMP28Q9H239 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 AC098590.1-201ENST00000468126 897 ntBASIC16.1■□□□□ 0.17
MMP28Q9H239 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.1■□□□□ 0.17
MMP28Q9H239 ADM-205ENST00000528544 586 ntTSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms