Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 AL645929.1-201ENST00000420084 975 ntBASIC18.69■□□□□ 0.58
RTL3Q8N8U3 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 AP003733.1-201ENST00000491725 852 ntBASIC18.69■□□□□ 0.58
RTL3Q8N8U3 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 AC093010.1-201ENST00000473625 1624 ntBASIC18.69■□□□□ 0.58
RTL3Q8N8U3 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 NEFHP1-201ENST00000412845 2629 ntBASIC18.69■□□□□ 0.58
RTL3Q8N8U3 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
RTL3Q8N8U3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 AL096828.2-201ENST00000567259 1965 ntBASIC18.68■□□□□ 0.58
RTL3Q8N8U3 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 FAM86EP-206ENST00000510506 987 ntBASIC18.68■□□□□ 0.58
RTL3Q8N8U3 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 ABALON-201ENST00000629058 1903 ntBASIC18.68■□□□□ 0.58
RTL3Q8N8U3 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.68■□□□□ 0.58
RTL3Q8N8U3 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 AL354751.1-201ENST00000412768 1863 ntBASIC18.67■□□□□ 0.58
RTL3Q8N8U3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 IGHGP-201ENST00000390555 1178 ntBASIC18.67■□□□□ 0.58
RTL3Q8N8U3 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 AC005332.1-201ENST00000577698 1310 ntBASIC18.67■□□□□ 0.58
RTL3Q8N8U3 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
RTL3Q8N8U3 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 ARMC10P1-201ENST00000313754 855 ntBASIC18.66■□□□□ 0.58
RTL3Q8N8U3 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms