Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC24■■□□□ 1.43
USHBP1Q8N6Y0 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 RPP21-221ENST00000428040 594 ntTSL 2 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 AC139887.3-201ENST00000568585 713 ntBASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 AC011467.2-201ENST00000598425 242 ntBASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 AC116407.3-201ENST00000623905 1129 ntBASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC23.99■■□□□ 1.43
USHBP1Q8N6Y0 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 RPL13AP23-201ENST00000480739 586 ntBASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 AC009533.2-201ENST00000543664 586 ntBASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USHBP1Q8N6Y0 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 RBM17P3-201ENST00000417687 1192 ntBASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 AC021087.4-201ENST00000563761 564 ntBASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
USHBP1Q8N6Y0 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 RBSN-204ENST00000449050 903 ntTSL 2 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 AC093909.1-201ENST00000504731 1122 ntBASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 KRT18P58-201ENST00000527480 1120 ntBASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
USHBP1Q8N6Y0 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC23.95■■□□□ 1.43
USHBP1Q8N6Y0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
USHBP1Q8N6Y0 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
USHBP1Q8N6Y0 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC23.95■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms