Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.31■□□□□ 0.2
H3F3AP84243 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
H3F3AP84243 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 SPDYE13P-201ENST00000445314 798 ntBASIC16.31■□□□□ 0.2
H3F3AP84243 AL671277.2-201ENST00000458060 996 ntBASIC16.31■□□□□ 0.2
H3F3AP84243 AC113404.2-201ENST00000507884 177 ntBASIC16.31■□□□□ 0.2
H3F3AP84243 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.31■□□□□ 0.2
H3F3AP84243 AC083849.1-201ENST00000615227 514 ntBASIC16.31■□□□□ 0.2
H3F3AP84243 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
H3F3AP84243 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.31■□□□□ 0.2
H3F3AP84243 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
H3F3AP84243 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
H3F3AP84243 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
H3F3AP84243 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.3■□□□□ 0.2
H3F3AP84243 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.3■□□□□ 0.2
H3F3AP84243 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.3■□□□□ 0.2
H3F3AP84243 AL031133.1-201ENST00000406807 723 ntBASIC16.3■□□□□ 0.2
H3F3AP84243 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
H3F3AP84243 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.3■□□□□ 0.2
H3F3AP84243 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.3■□□□□ 0.2
H3F3AP84243 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.3■□□□□ 0.2
H3F3AP84243 NTF6B-201ENST00000591913 560 ntBASIC16.3■□□□□ 0.2
H3F3AP84243 AC024563.2-201ENST00000603282 481 ntBASIC16.3■□□□□ 0.2
H3F3AP84243 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.3■□□□□ 0.2
H3F3AP84243 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
H3F3AP84243 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
H3F3AP84243 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
H3F3AP84243 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.29■□□□□ 0.2
H3F3AP84243 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.29■□□□□ 0.2
H3F3AP84243 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
H3F3AP84243 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
H3F3AP84243 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
H3F3AP84243 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.29■□□□□ 0.2
H3F3AP84243 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.29■□□□□ 0.2
H3F3AP84243 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.29■□□□□ 0.2
H3F3AP84243 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.29■□□□□ 0.2
H3F3AP84243 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.29■□□□□ 0.2
H3F3AP84243 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.29■□□□□ 0.2
H3F3AP84243 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 ZNF444P1-201ENST00000559497 298 ntBASIC16.29■□□□□ 0.2
H3F3AP84243 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.29■□□□□ 0.2
H3F3AP84243 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.29■□□□□ 0.2
H3F3AP84243 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
H3F3AP84243 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.29■□□□□ 0.2
H3F3AP84243 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.29■□□□□ 0.2
H3F3AP84243 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
H3F3AP84243 AL354751.1-201ENST00000412768 1863 ntBASIC16.29■□□□□ 0.2
H3F3AP84243 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.28■□□□□ 0.2
H3F3AP84243 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
H3F3AP84243 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.28■□□□□ 0.2
H3F3AP84243 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.28■□□□□ 0.2
H3F3AP84243 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.28■□□□□ 0.2
H3F3AP84243 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
H3F3AP84243 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms