Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RAE1P78406 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RAE1P78406 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
RAE1P78406 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.32■□□□□ 0.36
RAE1P78406 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
RAE1P78406 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
RAE1P78406 SLC25A3P1-201ENST00000443844 931 ntBASIC17.32■□□□□ 0.36
RAE1P78406 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.32■□□□□ 0.36
RAE1P78406 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.32■□□□□ 0.36
RAE1P78406 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.32■□□□□ 0.36
RAE1P78406 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.32■□□□□ 0.36
RAE1P78406 AC092865.7-201ENST00000641832 219 ntBASIC17.32■□□□□ 0.36
RAE1P78406 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
RAE1P78406 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RAE1P78406 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 AC132938.6-201ENST00000623828 1655 ntBASIC17.32■□□□□ 0.36
RAE1P78406 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
RAE1P78406 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.32■□□□□ 0.36
RAE1P78406 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.32■□□□□ 0.36
RAE1P78406 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RAE1P78406 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RAE1P78406 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RAE1P78406 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
RAE1P78406 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.31■□□□□ 0.36
RAE1P78406 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.31■□□□□ 0.36
RAE1P78406 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.31■□□□□ 0.36
RAE1P78406 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.31■□□□□ 0.36
RAE1P78406 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.31■□□□□ 0.36
RAE1P78406 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.31■□□□□ 0.36
RAE1P78406 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.31■□□□□ 0.36
RAE1P78406 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.31■□□□□ 0.36
RAE1P78406 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RAE1P78406 AC010203.1-204ENST00000548782 407 ntBASIC17.31■□□□□ 0.36
RAE1P78406 GCSHP2-201ENST00000560971 527 ntBASIC17.31■□□□□ 0.36
RAE1P78406 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.31■□□□□ 0.36
RAE1P78406 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.31■□□□□ 0.36
RAE1P78406 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.31■□□□□ 0.36
RAE1P78406 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
RAE1P78406 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 GNAS-203ENST00000306120 1878 ntBASIC17.31■□□□□ 0.36
RAE1P78406 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.31■□□□□ 0.36
RAE1P78406 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RAE1P78406 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
RAE1P78406 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.3■□□□□ 0.36
RAE1P78406 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.3■□□□□ 0.36
RAE1P78406 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.3■□□□□ 0.36
RAE1P78406 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.3■□□□□ 0.36
RAE1P78406 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RAE1P78406 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.3■□□□□ 0.36
RAE1P78406 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.3■□□□□ 0.36
RAE1P78406 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.3■□□□□ 0.36
RAE1P78406 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.3■□□□□ 0.36
RAE1P78406 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
RAE1P78406 AC012306.2-201ENST00000609350 630 ntBASIC17.3■□□□□ 0.36
RAE1P78406 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
RAE1P78406 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.3■□□□□ 0.36
RAE1P78406 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.3■□□□□ 0.36
RAE1P78406 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
RAE1P78406 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
RAE1P78406 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
RAE1P78406 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RAE1P78406 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RAE1P78406 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RAE1P78406 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RAE1P78406 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms