Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.46■□□□□ 0.71
COL4A4P53420 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
COL4A4P53420 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.46■□□□□ 0.71
COL4A4P53420 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.46■□□□□ 0.7
COL4A4P53420 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
COL4A4P53420 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.7
COL4A4P53420 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
COL4A4P53420 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.45■□□□□ 0.7
COL4A4P53420 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.45■□□□□ 0.7
COL4A4P53420 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.45■□□□□ 0.7
COL4A4P53420 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COL4A4P53420 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.45■□□□□ 0.7
COL4A4P53420 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.45■□□□□ 0.7
COL4A4P53420 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.45■□□□□ 0.7
COL4A4P53420 AL139288.1-201ENST00000623748 933 ntBASIC19.45■□□□□ 0.7
COL4A4P53420 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A4P53420 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.45■□□□□ 0.7
COL4A4P53420 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.44■□□□□ 0.7
COL4A4P53420 TP73-AS1-210ENST00000637775 1455 ntBASIC19.44■□□□□ 0.7
COL4A4P53420 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
COL4A4P53420 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 RCN1P2-201ENST00000398357 915 ntBASIC19.44■□□□□ 0.7
COL4A4P53420 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.44■□□□□ 0.7
COL4A4P53420 AC132008.2-207ENST00000454517 770 ntBASIC19.44■□□□□ 0.7
COL4A4P53420 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
COL4A4P53420 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A4P53420 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A4P53420 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL4A4P53420 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
COL4A4P53420 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 KRT18P3-201ENST00000451602 1288 ntBASIC19.43■□□□□ 0.7
COL4A4P53420 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.43■□□□□ 0.7
COL4A4P53420 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A4P53420 AC002347.1-201ENST00000569543 541 ntBASIC19.43■□□□□ 0.7
COL4A4P53420 AC025062.2-201ENST00000605477 670 ntBASIC19.43■□□□□ 0.7
COL4A4P53420 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A4P53420 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A4P53420 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A4P53420 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A4P53420 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A4P53420 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL4A4P53420 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A4P53420 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A4P53420 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.43■□□□□ 0.7
COL4A4P53420 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A4P53420 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A4P53420 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A4P53420 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 INTS4P1-201ENST00000438455 1935 ntBASIC19.43■□□□□ 0.7
COL4A4P53420 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A4P53420 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.42■□□□□ 0.7
COL4A4P53420 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.42■□□□□ 0.7
COL4A4P53420 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A4P53420 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A4P53420 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A4P53420 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.42■□□□□ 0.7
COL4A4P53420 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.42■□□□□ 0.7
COL4A4P53420 AP006288.1-201ENST00000446065 395 ntBASIC19.42■□□□□ 0.7
COL4A4P53420 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.42■□□□□ 0.7
COL4A4P53420 RNA5SP416-201ENST00000516838 111 ntBASIC19.42■□□□□ 0.7
COL4A4P53420 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.42■□□□□ 0.7
COL4A4P53420 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.42■□□□□ 0.7
COL4A4P53420 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A4P53420 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.42■□□□□ 0.7
COL4A4P53420 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.42■□□□□ 0.7
COL4A4P53420 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A4P53420 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.42■□□□□ 0.7
COL4A4P53420 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A4P53420 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
COL4A4P53420 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A4P53420 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms