Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CIITAP33076 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.51■□□□□ 0.87
CIITAP33076 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.51■□□□□ 0.87
CIITAP33076 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CIITAP33076 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
CIITAP33076 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CIITAP33076 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CIITAP33076 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CIITAP33076 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CIITAP33076 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CIITAP33076 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CIITAP33076 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.51■□□□□ 0.87
CIITAP33076 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CIITAP33076 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.51■□□□□ 0.87
CIITAP33076 TSPY12P-201ENST00000421279 868 ntBASIC20.51■□□□□ 0.87
CIITAP33076 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.51■□□□□ 0.87
CIITAP33076 AC068472.1-201ENST00000474589 881 ntBASIC20.51■□□□□ 0.87
CIITAP33076 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.51■□□□□ 0.87
CIITAP33076 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.51■□□□□ 0.87
CIITAP33076 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CIITAP33076 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
CIITAP33076 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CIITAP33076 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CIITAP33076 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.51■□□□□ 0.87
CIITAP33076 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
CIITAP33076 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CIITAP33076 AC104581.1-202ENST00000635932 2618 ntBASIC20.51■□□□□ 0.87
CIITAP33076 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CIITAP33076 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CIITAP33076 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.5■□□□□ 0.87
CIITAP33076 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.5■□□□□ 0.87
CIITAP33076 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.5■□□□□ 0.87
CIITAP33076 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.5■□□□□ 0.87
CIITAP33076 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.5■□□□□ 0.87
CIITAP33076 AL845331.1-201ENST00000424978 1190 ntBASIC20.5■□□□□ 0.87
CIITAP33076 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.5■□□□□ 0.87
CIITAP33076 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.5■□□□□ 0.87
CIITAP33076 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 DUTP2-201ENST00000519164 463 ntBASIC20.5■□□□□ 0.87
CIITAP33076 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.5■□□□□ 0.87
CIITAP33076 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
CIITAP33076 AC092119.3-201ENST00000612618 583 ntBASIC20.5■□□□□ 0.87
CIITAP33076 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.5■□□□□ 0.87
CIITAP33076 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.5■□□□□ 0.87
CIITAP33076 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.5■□□□□ 0.87
CIITAP33076 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 KRT18P1-202ENST00000452408 1331 ntBASIC20.5■□□□□ 0.87
CIITAP33076 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
CIITAP33076 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CIITAP33076 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.49■□□□□ 0.87
CIITAP33076 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 AL096828.2-201ENST00000567259 1965 ntBASIC20.49■□□□□ 0.87
CIITAP33076 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.49■□□□□ 0.87
CIITAP33076 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.49■□□□□ 0.87
CIITAP33076 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.49■□□□□ 0.87
CIITAP33076 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.49■□□□□ 0.87
CIITAP33076 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CIITAP33076 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.49■□□□□ 0.87
CIITAP33076 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
CIITAP33076 AC124864.1-201ENST00000623408 392 ntBASIC20.49■□□□□ 0.87
CIITAP33076 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CIITAP33076 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.49■□□□□ 0.87
CIITAP33076 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CIITAP33076 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.49■□□□□ 0.87
CIITAP33076 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.48■□□□□ 0.87
CIITAP33076 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms