Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RXRBP28702 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
RXRBP28702 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
RXRBP28702 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RXRBP28702 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC23.78■■□□□ 1.4
RXRBP28702 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RXRBP28702 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
RXRBP28702 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RXRBP28702 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RXRBP28702 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
RXRBP28702 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.77■■□□□ 1.4
RXRBP28702 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC23.77■■□□□ 1.4
RXRBP28702 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC23.77■■□□□ 1.4
RXRBP28702 CENPM-205ENST00000404067 905 ntTSL 3 BASIC23.77■■□□□ 1.4
RXRBP28702 CNN2P2-201ENST00000443536 909 ntBASIC23.77■■□□□ 1.4
RXRBP28702 CNN2P3-201ENST00000450201 906 ntBASIC23.77■■□□□ 1.4
RXRBP28702 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC23.77■■□□□ 1.4
RXRBP28702 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC23.77■■□□□ 1.4
RXRBP28702 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC23.77■■□□□ 1.4
RXRBP28702 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC23.77■■□□□ 1.4
RXRBP28702 AC051619.7-201ENST00000568314 623 ntBASIC23.77■■□□□ 1.4
RXRBP28702 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC23.77■■□□□ 1.4
RXRBP28702 AL136317.3-201ENST00000618497 906 ntBASIC23.77■■□□□ 1.4
RXRBP28702 AC009093.7-201ENST00000623853 1223 ntBASIC23.77■■□□□ 1.4
RXRBP28702 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC23.77■■□□□ 1.4
RXRBP28702 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC23.77■■□□□ 1.4
RXRBP28702 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
RXRBP28702 KRT8P47-201ENST00000604727 1398 ntBASIC23.77■■□□□ 1.4
RXRBP28702 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
RXRBP28702 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC23.76■■□□□ 1.39
RXRBP28702 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC23.76■■□□□ 1.39
RXRBP28702 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC23.76■■□□□ 1.39
RXRBP28702 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RXRBP28702 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RXRBP28702 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RXRBP28702 GOLGA6L11P-201ENST00000417252 1298 ntBASIC23.76■■□□□ 1.39
RXRBP28702 DDX43P3-201ENST00000441064 443 ntBASIC23.76■■□□□ 1.39
RXRBP28702 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC23.76■■□□□ 1.39
RXRBP28702 POLD4-207ENST00000531239 584 ntTSL 2 BASIC23.76■■□□□ 1.39
RXRBP28702 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC23.76■■□□□ 1.39
RXRBP28702 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC23.76■■□□□ 1.39
RXRBP28702 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RXRBP28702 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RXRBP28702 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC23.76■■□□□ 1.39
RXRBP28702 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.76■■□□□ 1.39
RXRBP28702 ASL-204ENST00000395331 1538 ntTSL 5 BASIC23.75■■□□□ 1.39
RXRBP28702 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
RXRBP28702 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC23.75■■□□□ 1.39
RXRBP28702 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
RXRBP28702 AL596325.1-201ENST00000563991 1082 ntBASIC23.75■■□□□ 1.39
RXRBP28702 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
RXRBP28702 AC025048.6-201ENST00000634326 1161 ntBASIC23.75■■□□□ 1.39
RXRBP28702 AC068587.9-201ENST00000641814 219 ntBASIC23.75■■□□□ 1.39
RXRBP28702 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 REM2-202ENST00000536884 1331 ntTSL 2 BASIC23.75■■□□□ 1.39
RXRBP28702 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
RXRBP28702 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC23.75■■□□□ 1.39
RXRBP28702 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.74■■□□□ 1.39
RXRBP28702 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC23.74■■□□□ 1.39
RXRBP28702 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 TEX21P-204ENST00000641479 1693 ntBASIC23.74■■□□□ 1.39
RXRBP28702 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
RXRBP28702 SPDYE21P-201ENST00000413323 827 ntBASIC23.74■■□□□ 1.39
RXRBP28702 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC23.74■■□□□ 1.39
RXRBP28702 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC23.74■■□□□ 1.39
RXRBP28702 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
RXRBP28702 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 AC020907.5-201ENST00000624372 1936 ntBASIC23.74■■□□□ 1.39
RXRBP28702 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
RXRBP28702 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RXRBP28702 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC23.73■■□□□ 1.39
RXRBP28702 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms