Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF40AO75400 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.25■□□□□ 0.99
PRPF40AO75400 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF40AO75400 AC110285.5-201ENST00000611501 352 ntBASIC21.25■□□□□ 0.99
PRPF40AO75400 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF40AO75400 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PRPF40AO75400 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC21.24■□□□□ 0.99
PRPF40AO75400 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
PRPF40AO75400 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC21.24■□□□□ 0.99
PRPF40AO75400 AC124067.4-201ENST00000519691 2379 ntBASIC21.24■□□□□ 0.99
PRPF40AO75400 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.24■□□□□ 0.99
PRPF40AO75400 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.24■□□□□ 0.99
PRPF40AO75400 AC006116.8-202ENST00000587620 1550 ntBASIC21.24■□□□□ 0.99
PRPF40AO75400 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
PRPF40AO75400 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
PRPF40AO75400 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC21.24■□□□□ 0.99
PRPF40AO75400 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.24■□□□□ 0.99
PRPF40AO75400 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.24■□□□□ 0.99
PRPF40AO75400 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 KRT18P41-201ENST00000518924 1277 ntBASIC21.24■□□□□ 0.99
PRPF40AO75400 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.24■□□□□ 0.99
PRPF40AO75400 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.24■□□□□ 0.99
PRPF40AO75400 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.24■□□□□ 0.99
PRPF40AO75400 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
PRPF40AO75400 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
PRPF40AO75400 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
PRPF40AO75400 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.24■□□□□ 0.99
PRPF40AO75400 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PRPF40AO75400 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
PRPF40AO75400 GMCL1P1-201ENST00000463439 1581 ntBASIC21.23■□□□□ 0.99
PRPF40AO75400 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF40AO75400 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF40AO75400 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF40AO75400 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF40AO75400 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF40AO75400 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
PRPF40AO75400 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF40AO75400 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF40AO75400 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF40AO75400 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF40AO75400 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
PRPF40AO75400 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF40AO75400 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.23■□□□□ 0.99
PRPF40AO75400 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.23■□□□□ 0.99
PRPF40AO75400 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF40AO75400 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.23■□□□□ 0.99
PRPF40AO75400 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.23■□□□□ 0.99
PRPF40AO75400 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF40AO75400 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
PRPF40AO75400 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
PRPF40AO75400 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC21.23■□□□□ 0.99
PRPF40AO75400 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC21.23■□□□□ 0.99
PRPF40AO75400 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
PRPF40AO75400 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF40AO75400 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF40AO75400 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PRPF40AO75400 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
PRPF40AO75400 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
PRPF40AO75400 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.22■□□□□ 0.99
PRPF40AO75400 AC022211.2-201ENST00000585075 2527 ntBASIC21.22■□□□□ 0.99
PRPF40AO75400 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
PRPF40AO75400 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
PRPF40AO75400 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.22■□□□□ 0.99
PRPF40AO75400 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
PRPF40AO75400 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.22■□□□□ 0.99
PRPF40AO75400 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.22■□□□□ 0.99
PRPF40AO75400 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.22■□□□□ 0.99
PRPF40AO75400 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.22■□□□□ 0.99
PRPF40AO75400 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
PRPF40AO75400 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms