Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 AIRN-201ENST00000601203 4374 ntBASIC18.05■□□□□ 0.48
MKS1Q9NXB0 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 MFAP1P1-201ENST00000442257 1255 ntBASIC18.05■□□□□ 0.48
MKS1Q9NXB0 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
MKS1Q9NXB0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 LINC00602-201ENST00000629776 2065 ntBASIC18.04■□□□□ 0.48
MKS1Q9NXB0 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 AC133963.1-201ENST00000504166 1679 ntBASIC18.04■□□□□ 0.48
MKS1Q9NXB0 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MKS1Q9NXB0 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 AL024508.2-201ENST00000607749 1894 ntBASIC18.03■□□□□ 0.48
MKS1Q9NXB0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 AP001094.4-201ENST00000579008 2176 ntBASIC18.03■□□□□ 0.48
MKS1Q9NXB0 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.03■□□□□ 0.48
MKS1Q9NXB0 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
MKS1Q9NXB0 AL121761.2-201ENST00000598007 1648 ntBASIC18.02■□□□□ 0.48
MKS1Q9NXB0 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms