Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 KRT8P45-201ENST00000414328 1447 ntBASIC17.51■□□□□ 0.39
VMP1Q96GC9 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 AC067852.2-201ENST00000590513 2313 ntBASIC17.51■□□□□ 0.39
VMP1Q96GC9 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 AC141257.4-201ENST00000634557 245 ntBASIC17.51■□□□□ 0.39
VMP1Q96GC9 AC136944.6-201ENST00000634818 245 ntBASIC17.51■□□□□ 0.39
VMP1Q96GC9 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 GPAT2P1-201ENST00000444924 1672 ntBASIC17.51■□□□□ 0.39
VMP1Q96GC9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VMP1Q96GC9 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
VMP1Q96GC9 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 AL161938.1-201ENST00000569833 2180 ntBASIC17.5■□□□□ 0.39
VMP1Q96GC9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 AL023284.2-201ENST00000405850 579 ntBASIC17.5■□□□□ 0.39
VMP1Q96GC9 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 MCCD1P1-208ENST00000445732 328 ntBASIC17.5■□□□□ 0.39
VMP1Q96GC9 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
VMP1Q96GC9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VMP1Q96GC9 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms