Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PIN1P1-201ENST00000412108 996 ntBASIC18.44■□□□□ 0.54
TTC28Q96AY4 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 OR7E47P-204ENST00000575924 449 ntBASIC18.44■□□□□ 0.54
TTC28Q96AY4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 MIR943-201ENST00000401286 94 ntBASIC18.44■□□□□ 0.54
TTC28Q96AY4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 AC009154.2-201ENST00000621177 724 ntBASIC18.44■□□□□ 0.54
TTC28Q96AY4 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TTC28Q96AY4 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TTC28Q96AY4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TTC28Q96AY4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.43■□□□□ 0.54
TTC28Q96AY4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TTC28Q96AY4 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
TTC28Q96AY4 SERBP1P5-201ENST00000510079 1181 ntBASIC18.43■□□□□ 0.54
TTC28Q96AY4 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TTC28Q96AY4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TTC28Q96AY4 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TTC28Q96AY4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TTC28Q96AY4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TTC28Q96AY4 AC003669.1-201ENST00000334569 611 ntBASIC18.42■□□□□ 0.54
TTC28Q96AY4 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 RHOQP3-201ENST00000437982 621 ntBASIC18.42■□□□□ 0.54
TTC28Q96AY4 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TTC28Q96AY4 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TTC28Q96AY4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.42■□□□□ 0.54
TTC28Q96AY4 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.42■□□□□ 0.54
TTC28Q96AY4 IGHV3-72-202ENST00000621503 303 ntBASIC18.42■□□□□ 0.54
TTC28Q96AY4 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TTC28Q96AY4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TTC28Q96AY4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TTC28Q96AY4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TTC28Q96AY4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 AL033527.4-201ENST00000641026 673 ntBASIC18.41■□□□□ 0.54
TTC28Q96AY4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 AC096734.2-201ENST00000562054 433 ntBASIC18.41■□□□□ 0.54
TTC28Q96AY4 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
TTC28Q96AY4 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TTC28Q96AY4 AC025580.3-201ENST00000617932 1424 ntBASIC18.4■□□□□ 0.54
TTC28Q96AY4 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms