Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.75■□□□□ 0.91
ERCC4Q92889 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.75■□□□□ 0.91
ERCC4Q92889 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.75■□□□□ 0.91
ERCC4Q92889 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
ERCC4Q92889 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
ERCC4Q92889 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 AC139713.2-201ENST00000641328 2723 ntBASIC20.75■□□□□ 0.91
ERCC4Q92889 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.74■□□□□ 0.91
ERCC4Q92889 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
ERCC4Q92889 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
ERCC4Q92889 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.74■□□□□ 0.91
ERCC4Q92889 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.74■□□□□ 0.91
ERCC4Q92889 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
ERCC4Q92889 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
ERCC4Q92889 MIR564-202ENST00000385049 94 ntBASIC20.74■□□□□ 0.91
ERCC4Q92889 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.74■□□□□ 0.91
ERCC4Q92889 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
ERCC4Q92889 MFAP1P1-201ENST00000442257 1255 ntBASIC20.74■□□□□ 0.91
ERCC4Q92889 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.74■□□□□ 0.91
ERCC4Q92889 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.74■□□□□ 0.91
ERCC4Q92889 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.74■□□□□ 0.91
ERCC4Q92889 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 KRT8P50-201ENST00000562022 1438 ntBASIC20.74■□□□□ 0.91
ERCC4Q92889 MIR4674-201ENST00000582457 87 ntBASIC20.74■□□□□ 0.91
ERCC4Q92889 ITM2C-210ENST00000620962 501 ntBASIC20.74■□□□□ 0.91
ERCC4Q92889 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
ERCC4Q92889 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC20.73■□□□□ 0.91
ERCC4Q92889 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.73■□□□□ 0.91
ERCC4Q92889 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
ERCC4Q92889 AC096733.2-201ENST00000609937 1394 ntBASIC20.73■□□□□ 0.91
ERCC4Q92889 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
ERCC4Q92889 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
ERCC4Q92889 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
ERCC4Q92889 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
ERCC4Q92889 AC020916.1-201ENST00000587762 1774 ntBASIC20.73■□□□□ 0.91
ERCC4Q92889 PHGDH-209ENST00000641074 1780 ntBASIC20.73■□□□□ 0.91
ERCC4Q92889 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.73■□□□□ 0.91
ERCC4Q92889 KRT18P29-201ENST00000397031 1267 ntBASIC20.73■□□□□ 0.91
ERCC4Q92889 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.73■□□□□ 0.91
ERCC4Q92889 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.73■□□□□ 0.91
ERCC4Q92889 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.73■□□□□ 0.91
ERCC4Q92889 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.73■□□□□ 0.91
ERCC4Q92889 KRT18P41-201ENST00000518924 1277 ntBASIC20.73■□□□□ 0.91
ERCC4Q92889 TMEM191A-211ENST00000637163 1067 ntBASIC20.73■□□□□ 0.91
ERCC4Q92889 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
ERCC4Q92889 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.73■□□□□ 0.91
ERCC4Q92889 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.73■□□□□ 0.91
ERCC4Q92889 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.73■□□□□ 0.91
ERCC4Q92889 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.73■□□□□ 0.91
ERCC4Q92889 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.73■□□□□ 0.91
ERCC4Q92889 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
ERCC4Q92889 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.73■□□□□ 0.91
ERCC4Q92889 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
ERCC4Q92889 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
ERCC4Q92889 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.72■□□□□ 0.91
ERCC4Q92889 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.72■□□□□ 0.91
ERCC4Q92889 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
ERCC4Q92889 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.72■□□□□ 0.91
ERCC4Q92889 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
ERCC4Q92889 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms