Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC23.8■■□□□ 1.4
RTF1Q92541 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
RTF1Q92541 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC23.8■■□□□ 1.4
RTF1Q92541 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC23.8■■□□□ 1.4
RTF1Q92541 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
RTF1Q92541 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RTF1Q92541 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RTF1Q92541 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC23.8■■□□□ 1.4
RTF1Q92541 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RTF1Q92541 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC23.8■■□□□ 1.4
RTF1Q92541 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC23.79■■□□□ 1.4
RTF1Q92541 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
RTF1Q92541 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 AC246785.2-201ENST00000432512 513 ntBASIC23.79■■□□□ 1.4
RTF1Q92541 ABR-204ENST00000543210 1049 ntTSL 2 BASIC23.79■■□□□ 1.4
RTF1Q92541 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC23.79■■□□□ 1.4
RTF1Q92541 AC111152.3-201ENST00000569699 673 ntBASIC23.79■■□□□ 1.4
RTF1Q92541 ABR-217ENST00000572441 563 ntTSL 4 BASIC23.79■■□□□ 1.4
RTF1Q92541 AL121772.3-201ENST00000610840 674 ntBASIC23.79■■□□□ 1.4
RTF1Q92541 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTF1Q92541 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
RTF1Q92541 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
RTF1Q92541 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RTF1Q92541 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC23.78■■□□□ 1.4
RTF1Q92541 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
RTF1Q92541 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RTF1Q92541 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RTF1Q92541 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC23.78■■□□□ 1.4
RTF1Q92541 TSPY19P-201ENST00000418461 509 ntBASIC23.78■■□□□ 1.4
RTF1Q92541 TSPY18P-201ENST00000441642 509 ntBASIC23.78■■□□□ 1.4
RTF1Q92541 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC23.78■■□□□ 1.4
RTF1Q92541 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
RTF1Q92541 AC099336.1-202ENST00000602961 463 ntBASIC23.78■■□□□ 1.4
RTF1Q92541 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC23.78■■□□□ 1.4
RTF1Q92541 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RTF1Q92541 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC23.78■■□□□ 1.4
RTF1Q92541 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RTF1Q92541 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RTF1Q92541 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RTF1Q92541 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
RTF1Q92541 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RTF1Q92541 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 LINC00602-201ENST00000629776 2065 ntBASIC23.77■■□□□ 1.4
RTF1Q92541 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
RTF1Q92541 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
RTF1Q92541 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC23.77■■□□□ 1.4
RTF1Q92541 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC23.77■■□□□ 1.4
RTF1Q92541 IGHV3-47-201ENST00000425060 335 ntBASIC23.77■■□□□ 1.4
RTF1Q92541 AC091607.1-201ENST00000490318 1060 ntBASIC23.77■■□□□ 1.4
RTF1Q92541 AC091304.2-201ENST00000564639 760 ntBASIC23.77■■□□□ 1.4
RTF1Q92541 TBCB-205ENST00000585746 875 ntTSL 3 BASIC23.77■■□□□ 1.4
RTF1Q92541 AC138894.3-201ENST00000603787 634 ntBASIC23.77■■□□□ 1.4
RTF1Q92541 AL732292.2-201ENST00000609649 430 ntBASIC23.77■■□□□ 1.4
RTF1Q92541 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 GMCL1P1-201ENST00000463439 1581 ntBASIC23.77■■□□□ 1.4
RTF1Q92541 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTF1Q92541 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RTF1Q92541 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RTF1Q92541 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RTF1Q92541 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RTF1Q92541 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC23.76■■□□□ 1.39
RTF1Q92541 AL845331.1-201ENST00000424978 1190 ntBASIC23.76■■□□□ 1.39
RTF1Q92541 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
RTF1Q92541 UNC93B7-201ENST00000509439 705 ntBASIC23.76■■□□□ 1.39
RTF1Q92541 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC23.76■■□□□ 1.39
RTF1Q92541 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC23.76■■□□□ 1.39
RTF1Q92541 AP005901.3-202ENST00000581653 237 ntBASIC23.76■■□□□ 1.39
RTF1Q92541 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RTF1Q92541 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC23.76■■□□□ 1.39
RTF1Q92541 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
RTF1Q92541 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC23.76■■□□□ 1.39
RTF1Q92541 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RTF1Q92541 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RTF1Q92541 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RTF1Q92541 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
RTF1Q92541 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC23.75■■□□□ 1.39
RTF1Q92541 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RTF1Q92541 NSUN5P1-202ENST00000421140 1535 ntBASIC23.75■■□□□ 1.39
RTF1Q92541 NSUN5P2-203ENST00000457352 1529 ntBASIC23.75■■□□□ 1.39
RTF1Q92541 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms