Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 SDHAP2-201ENST00000455183 2001 ntBASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 AL031133.1-201ENST00000406807 723 ntBASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 HOMER2P1-201ENST00000455653 964 ntBASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 AL358472.4-201ENST00000633140 710 ntBASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 AC093677.2-201ENST00000600169 1863 ntBASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 AC009102.3-201ENST00000623118 1491 ntBASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 MIR149-201ENST00000384879 89 ntBASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 AC138932.1-201ENST00000534164 6830 ntBASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PTCHD3Q3KNS1 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 AP000523.1-201ENST00000398242 1049 ntBASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 KRT18P38-201ENST00000449496 1282 ntBASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 GCSHP2-201ENST00000560971 527 ntBASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms