Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 RNA5SP413-201ENST00000516373 109 ntBASIC17.03■□□□□ 0.32
RFX4Q33E94 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.03■□□□□ 0.32
RFX4Q33E94 AL023875.1-201ENST00000640777 796 ntBASIC17.03■□□□□ 0.32
RFX4Q33E94 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
RFX4Q33E94 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.03■□□□□ 0.32
RFX4Q33E94 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.03■□□□□ 0.32
RFX4Q33E94 AD000864.1-201ENST00000624076 2295 ntBASIC17.03■□□□□ 0.32
RFX4Q33E94 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
RFX4Q33E94 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
RFX4Q33E94 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.02■□□□□ 0.32
RFX4Q33E94 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.02■□□□□ 0.32
RFX4Q33E94 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
RFX4Q33E94 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.02■□□□□ 0.32
RFX4Q33E94 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.02■□□□□ 0.32
RFX4Q33E94 AC233263.1-201ENST00000578059 224 ntBASIC17.02■□□□□ 0.32
RFX4Q33E94 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.02■□□□□ 0.32
RFX4Q33E94 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.02■□□□□ 0.32
RFX4Q33E94 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RFX4Q33E94 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.02■□□□□ 0.31
RFX4Q33E94 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RFX4Q33E94 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RFX4Q33E94 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
RFX4Q33E94 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.02■□□□□ 0.31
RFX4Q33E94 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RFX4Q33E94 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.02■□□□□ 0.31
RFX4Q33E94 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
RFX4Q33E94 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.02■□□□□ 0.31
RFX4Q33E94 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RFX4Q33E94 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
RFX4Q33E94 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 KRASP1-201ENST00000407852 552 ntBASIC17.01■□□□□ 0.31
RFX4Q33E94 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 KRT18P41-201ENST00000518924 1277 ntBASIC17.01■□□□□ 0.31
RFX4Q33E94 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.01■□□□□ 0.31
RFX4Q33E94 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
RFX4Q33E94 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
RFX4Q33E94 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.01■□□□□ 0.31
RFX4Q33E94 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
RFX4Q33E94 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
RFX4Q33E94 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.01■□□□□ 0.31
RFX4Q33E94 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RFX4Q33E94 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17■□□□□ 0.31
RFX4Q33E94 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
RFX4Q33E94 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17■□□□□ 0.31
RFX4Q33E94 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17■□□□□ 0.31
RFX4Q33E94 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17■□□□□ 0.31
RFX4Q33E94 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17■□□□□ 0.31
RFX4Q33E94 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17■□□□□ 0.31
RFX4Q33E94 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RFX4Q33E94 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RFX4Q33E94 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
RFX4Q33E94 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RFX4Q33E94 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RFX4Q33E94 ID1-201ENST00000376105 1233 ntBASIC17■□□□□ 0.31
RFX4Q33E94 AC239809.2-201ENST00000415381 517 ntBASIC17■□□□□ 0.31
RFX4Q33E94 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17■□□□□ 0.31
RFX4Q33E94 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17■□□□□ 0.31
RFX4Q33E94 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RFX4Q33E94 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17■□□□□ 0.31
RFX4Q33E94 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
RFX4Q33E94 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms