Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.52■□□□□ 0.88
TPM4P67936 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.52■□□□□ 0.87
TPM4P67936 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
TPM4P67936 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TPM4P67936 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TPM4P67936 AC012313.1-201ENST00000593393 3059 ntBASIC20.52■□□□□ 0.87
TPM4P67936 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
TPM4P67936 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TPM4P67936 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.51■□□□□ 0.87
TPM4P67936 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TPM4P67936 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
TPM4P67936 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.51■□□□□ 0.87
TPM4P67936 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.51■□□□□ 0.87
TPM4P67936 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.51■□□□□ 0.87
TPM4P67936 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.51■□□□□ 0.87
TPM4P67936 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.51■□□□□ 0.87
TPM4P67936 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
TPM4P67936 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.51■□□□□ 0.87
TPM4P67936 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC20.51■□□□□ 0.87
TPM4P67936 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM4P67936 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.51■□□□□ 0.87
TPM4P67936 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM4P67936 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.5■□□□□ 0.87
TPM4P67936 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC20.5■□□□□ 0.87
TPM4P67936 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TPM4P67936 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
TPM4P67936 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM4P67936 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TPM4P67936 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TPM4P67936 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
TPM4P67936 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
TPM4P67936 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TPM4P67936 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TPM4P67936 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
TPM4P67936 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
TPM4P67936 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.5■□□□□ 0.87
TPM4P67936 AC239809.2-201ENST00000415381 517 ntBASIC20.5■□□□□ 0.87
TPM4P67936 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.5■□□□□ 0.87
TPM4P67936 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.5■□□□□ 0.87
TPM4P67936 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM4P67936 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.5■□□□□ 0.87
TPM4P67936 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
TPM4P67936 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.5■□□□□ 0.87
TPM4P67936 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.5■□□□□ 0.87
TPM4P67936 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM4P67936 AC012317.2-201ENST00000623305 2251 ntBASIC20.5■□□□□ 0.87
TPM4P67936 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.5■□□□□ 0.87
TPM4P67936 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM4P67936 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
TPM4P67936 AL109659.2-201ENST00000606809 1674 ntBASIC20.49■□□□□ 0.87
TPM4P67936 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.49■□□□□ 0.87
TPM4P67936 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 AL096828.2-201ENST00000567259 1965 ntBASIC20.49■□□□□ 0.87
TPM4P67936 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.49■□□□□ 0.87
TPM4P67936 KRASP1-201ENST00000407852 552 ntBASIC20.49■□□□□ 0.87
TPM4P67936 AC004951.3-201ENST00000418645 1148 ntBASIC20.49■□□□□ 0.87
TPM4P67936 AC004980.1-204ENST00000429707 299 ntBASIC20.49■□□□□ 0.87
TPM4P67936 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.49■□□□□ 0.87
TPM4P67936 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.49■□□□□ 0.87
TPM4P67936 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.49■□□□□ 0.87
TPM4P67936 AC069544.1-201ENST00000609399 999 ntBASIC20.49■□□□□ 0.87
TPM4P67936 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.49■□□□□ 0.87
TPM4P67936 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.49■□□□□ 0.87
TPM4P67936 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.49■□□□□ 0.87
TPM4P67936 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
TPM4P67936 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM4P67936 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.49■□□□□ 0.87
TPM4P67936 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.48■□□□□ 0.87
TPM4P67936 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.48■□□□□ 0.87
TPM4P67936 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms