Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
FOXA1P55317 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXA1P55317 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
FOXA1P55317 AL390955.1-201ENST00000428694 934 ntBASIC17.72■□□□□ 0.43
FOXA1P55317 TSPY7P-201ENST00000431358 1114 ntBASIC17.72■□□□□ 0.43
FOXA1P55317 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.72■□□□□ 0.43
FOXA1P55317 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXA1P55317 AL353719.1-201ENST00000566847 864 ntBASIC17.72■□□□□ 0.43
FOXA1P55317 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXA1P55317 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
FOXA1P55317 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXA1P55317 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
FOXA1P55317 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.71■□□□□ 0.43
FOXA1P55317 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.71■□□□□ 0.43
FOXA1P55317 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
FOXA1P55317 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.71■□□□□ 0.43
FOXA1P55317 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.71■□□□□ 0.43
FOXA1P55317 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
FOXA1P55317 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
FOXA1P55317 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.71■□□□□ 0.43
FOXA1P55317 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.71■□□□□ 0.43
FOXA1P55317 AP000525.1-201ENST00000608286 694 ntBASIC17.71■□□□□ 0.43
FOXA1P55317 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.71■□□□□ 0.43
FOXA1P55317 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
FOXA1P55317 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
FOXA1P55317 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
FOXA1P55317 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA1P55317 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
FOXA1P55317 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
FOXA1P55317 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.7■□□□□ 0.42
FOXA1P55317 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
FOXA1P55317 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
FOXA1P55317 UNC93B2-201ENST00000285383 730 ntBASIC17.7■□□□□ 0.42
FOXA1P55317 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.7■□□□□ 0.42
FOXA1P55317 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 SLC25A1P2-201ENST00000430693 912 ntBASIC17.7■□□□□ 0.42
FOXA1P55317 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.7■□□□□ 0.42
FOXA1P55317 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.7■□□□□ 0.42
FOXA1P55317 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
FOXA1P55317 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.7■□□□□ 0.42
FOXA1P55317 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.7■□□□□ 0.42
FOXA1P55317 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 AC092338.2-201ENST00000568827 1415 ntBASIC17.7■□□□□ 0.42
FOXA1P55317 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.7■□□□□ 0.42
FOXA1P55317 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA1P55317 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.69■□□□□ 0.42
FOXA1P55317 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.69■□□□□ 0.42
FOXA1P55317 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.69■□□□□ 0.42
FOXA1P55317 AC093010.1-201ENST00000473625 1624 ntBASIC17.69■□□□□ 0.42
FOXA1P55317 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.69■□□□□ 0.42
FOXA1P55317 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.69■□□□□ 0.42
FOXA1P55317 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.69■□□□□ 0.42
FOXA1P55317 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.69■□□□□ 0.42
FOXA1P55317 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.69■□□□□ 0.42
FOXA1P55317 WWOX-216ENST00000569818 525 ntBASIC17.69■□□□□ 0.42
FOXA1P55317 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.69■□□□□ 0.42
FOXA1P55317 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.69■□□□□ 0.42
FOXA1P55317 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.69■□□□□ 0.42
FOXA1P55317 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA1P55317 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms