Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
MSH6P52701 AP000867.4-201ENST00000641616 219 ntBASIC25.22■■□□□ 1.63
MSH6P52701 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
MSH6P52701 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC25.22■■□□□ 1.63
MSH6P52701 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC25.22■■□□□ 1.63
MSH6P52701 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC25.22■■□□□ 1.63
MSH6P52701 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
MSH6P52701 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
MSH6P52701 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
MSH6P52701 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
MSH6P52701 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC25.21■■□□□ 1.63
MSH6P52701 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
MSH6P52701 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
MSH6P52701 MKNK2P1-201ENST00000437526 628 ntBASIC25.21■■□□□ 1.63
MSH6P52701 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC25.21■■□□□ 1.63
MSH6P52701 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC25.21■■□□□ 1.63
MSH6P52701 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC25.21■■□□□ 1.63
MSH6P52701 SDCCAG3P1-201ENST00000589292 1150 ntBASIC25.21■■□□□ 1.63
MSH6P52701 AC027612.4-201ENST00000605371 583 ntBASIC25.21■■□□□ 1.63
MSH6P52701 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC25.21■■□□□ 1.63
MSH6P52701 AC073130.3-201ENST00000624389 2278 ntBASIC25.21■■□□□ 1.63
MSH6P52701 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC25.21■■□□□ 1.63
MSH6P52701 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
MSH6P52701 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC25.21■■□□□ 1.63
MSH6P52701 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
MSH6P52701 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
MSH6P52701 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
MSH6P52701 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC25.2■■□□□ 1.63
MSH6P52701 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC25.2■■□□□ 1.63
MSH6P52701 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC25.2■■□□□ 1.63
MSH6P52701 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
MSH6P52701 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC25.2■■□□□ 1.63
MSH6P52701 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC25.2■■□□□ 1.63
MSH6P52701 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC25.2■■□□□ 1.63
MSH6P52701 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC25.2■■□□□ 1.63
MSH6P52701 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC25.2■■□□□ 1.63
MSH6P52701 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC25.2■■□□□ 1.62
MSH6P52701 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC25.2■■□□□ 1.62
MSH6P52701 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
MSH6P52701 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
MSH6P52701 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
MSH6P52701 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
MSH6P52701 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
MSH6P52701 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
MSH6P52701 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
MSH6P52701 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
MSH6P52701 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC25.19■■□□□ 1.62
MSH6P52701 BCRP1-201ENST00000444246 691 ntBASIC25.19■■□□□ 1.62
MSH6P52701 BX005266.1-201ENST00000473402 457 ntBASIC25.19■■□□□ 1.62
MSH6P52701 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
MSH6P52701 AC136632.2-201ENST00000512891 861 ntBASIC25.19■■□□□ 1.62
MSH6P52701 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
MSH6P52701 AL022326.1-202ENST00000641533 845 ntBASIC25.19■■□□□ 1.62
MSH6P52701 AC092865.6-201ENST00000642101 219 ntBASIC25.19■■□□□ 1.62
MSH6P52701 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
MSH6P52701 ELL2P1-201ENST00000413990 1906 ntBASIC25.19■■□□□ 1.62
MSH6P52701 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
MSH6P52701 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
MSH6P52701 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
MSH6P52701 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
MSH6P52701 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
MSH6P52701 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
MSH6P52701 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
MSH6P52701 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC25.18■■□□□ 1.62
MSH6P52701 TCAP-202ENST00000578283 583 ntTSL 5 BASIC25.18■■□□□ 1.62
MSH6P52701 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
MSH6P52701 AL096865.1-201ENST00000606796 927 ntBASIC25.18■■□□□ 1.62
MSH6P52701 AL078644.1-201ENST00000609881 752 ntBASIC25.18■■□□□ 1.62
MSH6P52701 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC25.18■■□□□ 1.62
MSH6P52701 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
MSH6P52701 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC25.18■■□□□ 1.62
MSH6P52701 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
MSH6P52701 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC25.18■■□□□ 1.62
MSH6P52701 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
MSH6P52701 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC25.18■■□□□ 1.62
MSH6P52701 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
MSH6P52701 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC25.18■■□□□ 1.62
MSH6P52701 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC25.18■■□□□ 1.62
MSH6P52701 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
MSH6P52701 AC079776.2-201ENST00000641154 1609 ntBASIC25.17■■□□□ 1.62
MSH6P52701 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
MSH6P52701 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC25.17■■□□□ 1.62
MSH6P52701 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
MSH6P52701 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC25.17■■□□□ 1.62
MSH6P52701 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
MSH6P52701 AC009102.3-201ENST00000623118 1491 ntBASIC25.17■■□□□ 1.62
MSH6P52701 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC25.17■■□□□ 1.62
MSH6P52701 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
MSH6P52701 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
MSH6P52701 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
MSH6P52701 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC25.17■■□□□ 1.62
MSH6P52701 PRR29-209ENST00000582540 967 ntTSL 2 BASIC25.17■■□□□ 1.62
MSH6P52701 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC25.17■■□□□ 1.62
MSH6P52701 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
MSH6P52701 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC25.17■■□□□ 1.62
MSH6P52701 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
MSH6P52701 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC25.17■■□□□ 1.62
MSH6P52701 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
MSH6P52701 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC25.16■■□□□ 1.62
MSH6P52701 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms