Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MYC-209ENST00000641252 345 ntBASIC17.48■□□□□ 0.39
MSX2P35548 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
MSX2P35548 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.48■□□□□ 0.39
MSX2P35548 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
MSX2P35548 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 AC018695.7-201ENST00000624587 2492 ntBASIC17.48■□□□□ 0.39
MSX2P35548 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
MSX2P35548 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.48■□□□□ 0.39
MSX2P35548 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
MSX2P35548 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSX2P35548 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.48■□□□□ 0.39
MSX2P35548 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
MSX2P35548 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX2P35548 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
MSX2P35548 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
MSX2P35548 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
MSX2P35548 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 ANKRD20A6P-201ENST00000618763 204 ntBASIC17.47■□□□□ 0.39
MSX2P35548 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 NBPF21P-201ENST00000425093 1451 ntBASIC17.47■□□□□ 0.39
MSX2P35548 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.47■□□□□ 0.39
MSX2P35548 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
MSX2P35548 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
MSX2P35548 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX2P35548 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX2P35548 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
MSX2P35548 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX2P35548 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.46■□□□□ 0.39
MSX2P35548 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
MSX2P35548 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.46■□□□□ 0.39
MSX2P35548 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.46■□□□□ 0.39
MSX2P35548 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.46■□□□□ 0.39
MSX2P35548 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.46■□□□□ 0.39
MSX2P35548 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.46■□□□□ 0.39
MSX2P35548 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.46■□□□□ 0.39
MSX2P35548 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.46■□□□□ 0.39
MSX2P35548 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.46■□□□□ 0.39
MSX2P35548 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.46■□□□□ 0.39
MSX2P35548 IKBKGP1-201ENST00000612193 1073 ntBASIC17.46■□□□□ 0.39
MSX2P35548 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.46■□□□□ 0.39
MSX2P35548 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
MSX2P35548 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.46■□□□□ 0.39
MSX2P35548 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
MSX2P35548 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.46■□□□□ 0.39
MSX2P35548 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX2P35548 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.46■□□□□ 0.39
MSX2P35548 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
MSX2P35548 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
MSX2P35548 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.45■□□□□ 0.38
MSX2P35548 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.45■□□□□ 0.38
MSX2P35548 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
MSX2P35548 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.45■□□□□ 0.38
MSX2P35548 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms