Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC24.07■■□□□ 1.44
COL3A1P02461 FOSL1P1-201ENST00000511041 816 ntBASIC24.07■■□□□ 1.44
COL3A1P02461 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC24.07■■□□□ 1.44
COL3A1P02461 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC24.07■■□□□ 1.44
COL3A1P02461 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
COL3A1P02461 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC24.07■■□□□ 1.44
COL3A1P02461 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
COL3A1P02461 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
COL3A1P02461 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC24.07■■□□□ 1.44
COL3A1P02461 VENTXP7-201ENST00000475503 772 ntBASIC24.07■■□□□ 1.44
COL3A1P02461 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC24.07■■□□□ 1.44
COL3A1P02461 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC24.07■■□□□ 1.44
COL3A1P02461 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC24.07■■□□□ 1.44
COL3A1P02461 CCNC-219ENST00000627680 896 ntTSL 5 BASIC24.07■■□□□ 1.44
COL3A1P02461 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
COL3A1P02461 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC24.06■■□□□ 1.44
COL3A1P02461 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC24.06■■□□□ 1.44
COL3A1P02461 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC24.06■■□□□ 1.44
COL3A1P02461 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC24.06■■□□□ 1.44
COL3A1P02461 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC24.06■■□□□ 1.44
COL3A1P02461 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
COL3A1P02461 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC24.06■■□□□ 1.44
COL3A1P02461 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC24.06■■□□□ 1.44
COL3A1P02461 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC24.06■■□□□ 1.44
COL3A1P02461 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC24.06■■□□□ 1.44
COL3A1P02461 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
COL3A1P02461 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC24.06■■□□□ 1.44
COL3A1P02461 FICD-205ENST00000552758 603 ntTSL 2 BASIC24.06■■□□□ 1.44
COL3A1P02461 IRF5-214ENST00000613821 595 ntTSL 5 BASIC24.06■■□□□ 1.44
COL3A1P02461 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL3A1P02461 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC24.05■■□□□ 1.44
COL3A1P02461 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC24.05■■□□□ 1.44
COL3A1P02461 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC24.05■■□□□ 1.44
COL3A1P02461 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
COL3A1P02461 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL3A1P02461 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL3A1P02461 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC24.05■■□□□ 1.44
COL3A1P02461 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC24.05■■□□□ 1.44
COL3A1P02461 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC24.05■■□□□ 1.44
COL3A1P02461 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
COL3A1P02461 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC24.05■■□□□ 1.44
COL3A1P02461 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
COL3A1P02461 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL3A1P02461 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL3A1P02461 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
COL3A1P02461 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
COL3A1P02461 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC24.05■■□□□ 1.44
COL3A1P02461 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC24.05■■□□□ 1.44
COL3A1P02461 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC24.05■■□□□ 1.44
COL3A1P02461 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC24.05■■□□□ 1.44
COL3A1P02461 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC24.05■■□□□ 1.44
COL3A1P02461 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC24.05■■□□□ 1.44
COL3A1P02461 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
COL3A1P02461 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC24.05■■□□□ 1.44
COL3A1P02461 AC125634.1-201ENST00000438758 1403 ntBASIC24.05■■□□□ 1.44
COL3A1P02461 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
COL3A1P02461 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL3A1P02461 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC24.04■■□□□ 1.44
COL3A1P02461 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL3A1P02461 NUS1P2-201ENST00000417358 873 ntBASIC24.04■■□□□ 1.44
COL3A1P02461 KRT18P31-201ENST00000506277 1292 ntBASIC24.04■■□□□ 1.44
COL3A1P02461 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC24.04■■□□□ 1.44
COL3A1P02461 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
COL3A1P02461 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC24.04■■□□□ 1.44
COL3A1P02461 AC114341.1-201ENST00000618070 349 ntBASIC24.04■■□□□ 1.44
COL3A1P02461 AL691432.3-201ENST00000621860 400 ntBASIC24.04■■□□□ 1.44
COL3A1P02461 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
COL3A1P02461 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
COL3A1P02461 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
COL3A1P02461 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC24.04■■□□□ 1.44
COL3A1P02461 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
COL3A1P02461 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL3A1P02461 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
COL3A1P02461 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
COL3A1P02461 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL3A1P02461 AC096582.2-201ENST00000510860 516 ntBASIC24.03■■□□□ 1.44
COL3A1P02461 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC24.03■■□□□ 1.44
COL3A1P02461 AC111152.3-201ENST00000569699 673 ntBASIC24.03■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms