Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 AC012317.2-201ENST00000623305 2251 ntBASIC19.73■□□□□ 0.75
LRRC53A6NM62 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
LRRC53A6NM62 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.73■□□□□ 0.75
LRRC53A6NM62 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.73■□□□□ 0.75
LRRC53A6NM62 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LRRC53A6NM62 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.73■□□□□ 0.75
LRRC53A6NM62 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.72■□□□□ 0.75
LRRC53A6NM62 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.72■□□□□ 0.75
LRRC53A6NM62 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LRRC53A6NM62 SLC25A1P2-201ENST00000430693 912 ntBASIC19.72■□□□□ 0.75
LRRC53A6NM62 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
LRRC53A6NM62 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.72■□□□□ 0.75
LRRC53A6NM62 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.72■□□□□ 0.75
LRRC53A6NM62 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 LINC01126-201ENST00000623515 1646 ntBASIC19.72■□□□□ 0.75
LRRC53A6NM62 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LRRC53A6NM62 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
LRRC53A6NM62 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LRRC53A6NM62 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRRC53A6NM62 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 UNC93B2-201ENST00000285383 730 ntBASIC19.71■□□□□ 0.75
LRRC53A6NM62 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 WWOX-216ENST00000569818 525 ntBASIC19.71■□□□□ 0.75
LRRC53A6NM62 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 AC093010.1-201ENST00000473625 1624 ntBASIC19.71■□□□□ 0.75
LRRC53A6NM62 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
LRRC53A6NM62 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRRC53A6NM62 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 KRT8P7-201ENST00000533003 1432 ntBASIC19.7■□□□□ 0.74
LRRC53A6NM62 AC092338.2-201ENST00000568827 1415 ntBASIC19.7■□□□□ 0.74
LRRC53A6NM62 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 AC138932.1-201ENST00000534164 6830 ntBASIC19.7■□□□□ 0.74
LRRC53A6NM62 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 AL390955.1-201ENST00000428694 934 ntBASIC19.7■□□□□ 0.74
LRRC53A6NM62 TSPY7P-201ENST00000431358 1114 ntBASIC19.7■□□□□ 0.74
LRRC53A6NM62 TSPY17P-201ENST00000450329 467 ntBASIC19.7■□□□□ 0.74
LRRC53A6NM62 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 AP000525.1-201ENST00000608286 694 ntBASIC19.7■□□□□ 0.74
LRRC53A6NM62 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRRC53A6NM62 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.7■□□□□ 0.74
LRRC53A6NM62 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms