Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 AC074051.2-201ENST00000565115 352 ntBASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 Z69720.1-201ENST00000601483 472 ntBASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 AC138894.3-201ENST00000603787 634 ntBASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 AC124864.1-201ENST00000623408 392 ntBASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 AL499627.1-201ENST00000569373 2188 ntBASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 AC112777.1-201ENST00000540175 1423 ntBASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 NUS1P1-201ENST00000446295 882 ntBASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 MPI-205ENST00000562606 1052 ntTSL 3 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 IFNL4P1-201ENST00000607083 540 ntBASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 AC004263.2-201ENST00000617183 678 ntBASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRAV40A0A0B4J280 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 ASL-204ENST00000395331 1538 ntTSL 5 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 HTR7P1-202ENST00000624664 4411 ntBASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AC233702.3-201ENST00000578656 1387 ntBASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AC004870.1-201ENST00000315132 882 ntBASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 FOSL1P1-201ENST00000511041 816 ntBASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 RN7SL510P-201ENST00000581311 263 ntBASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AC008687.5-201ENST00000593746 558 ntBASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AL732292.2-201ENST00000609649 430 ntBASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms