Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.85■□□□□ 0.61
VCANP13611 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.85■□□□□ 0.61
VCANP13611 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VCANP13611 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.84■□□□□ 0.61
VCANP13611 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VCANP13611 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VCANP13611 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VCANP13611 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VCANP13611 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.84■□□□□ 0.61
VCANP13611 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.84■□□□□ 0.61
VCANP13611 NKAPP1-205ENST00000585790 367 ntBASIC18.84■□□□□ 0.61
VCANP13611 AC116407.2-201ENST00000613639 860 ntBASIC18.84■□□□□ 0.61
VCANP13611 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
VCANP13611 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.84■□□□□ 0.61
VCANP13611 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
VCANP13611 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VCANP13611 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
VCANP13611 TSPY16P-201ENST00000449843 468 ntBASIC18.84■□□□□ 0.61
VCANP13611 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
VCANP13611 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.84■□□□□ 0.61
VCANP13611 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.84■□□□□ 0.61
VCANP13611 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.84■□□□□ 0.61
VCANP13611 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.84■□□□□ 0.61
VCANP13611 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.84■□□□□ 0.61
VCANP13611 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VCANP13611 KRT89P-201ENST00000620027 1478 ntBASIC18.84■□□□□ 0.61
VCANP13611 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VCANP13611 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VCANP13611 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VCANP13611 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.83■□□□□ 0.61
VCANP13611 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.83■□□□□ 0.61
VCANP13611 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
VCANP13611 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.83■□□□□ 0.61
VCANP13611 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.83■□□□□ 0.61
VCANP13611 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
VCANP13611 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCANP13611 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VCANP13611 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.83■□□□□ 0.6
VCANP13611 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCANP13611 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.83■□□□□ 0.6
VCANP13611 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.83■□□□□ 0.6
VCANP13611 FAM207CP-201ENST00000443486 507 ntBASIC18.83■□□□□ 0.6
VCANP13611 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.83■□□□□ 0.6
VCANP13611 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VCANP13611 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.83■□□□□ 0.6
VCANP13611 AC091812.2-201ENST00000619081 385 ntBASIC18.83■□□□□ 0.6
VCANP13611 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCANP13611 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.83■□□□□ 0.6
VCANP13611 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
VCANP13611 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VCANP13611 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VCANP13611 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCANP13611 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.83■□□□□ 0.6
VCANP13611 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.83■□□□□ 0.6
VCANP13611 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.83■□□□□ 0.6
VCANP13611 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
VCANP13611 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.82■□□□□ 0.6
VCANP13611 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.82■□□□□ 0.6
VCANP13611 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.82■□□□□ 0.6
VCANP13611 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.82■□□□□ 0.6
VCANP13611 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.82■□□□□ 0.6
VCANP13611 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
VCANP13611 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.82■□□□□ 0.6
VCANP13611 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCANP13611 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VCANP13611 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.81■□□□□ 0.6
VCANP13611 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.81■□□□□ 0.6
VCANP13611 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VCANP13611 MIR3180-4-201ENST00000582223 153 ntBASIC18.81■□□□□ 0.6
VCANP13611 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.81■□□□□ 0.6
VCANP13611 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 AL033527.4-201ENST00000641026 673 ntBASIC18.81■□□□□ 0.6
VCANP13611 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.81■□□□□ 0.6
VCANP13611 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.81■□□□□ 0.6
VCANP13611 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCANP13611 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms