Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 FLJ13224-201ENST00000313737 1514 ntBASIC21.61■■□□□ 1.05
HMGB1P09429 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
HMGB1P09429 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 AL137013.1-201ENST00000432946 1228 ntBASIC21.61■■□□□ 1.05
HMGB1P09429 PVRIG2P-201ENST00000435460 978 ntBASIC21.61■■□□□ 1.05
HMGB1P09429 COX11P1-201ENST00000489116 835 ntBASIC21.61■■□□□ 1.05
HMGB1P09429 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.61■■□□□ 1.05
HMGB1P09429 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
HMGB1P09429 GCSHP2-201ENST00000560971 527 ntBASIC21.61■■□□□ 1.05
HMGB1P09429 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.61■■□□□ 1.05
HMGB1P09429 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.61■■□□□ 1.05
HMGB1P09429 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.61■■□□□ 1.05
HMGB1P09429 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
HMGB1P09429 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGB1P09429 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGB1P09429 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
HMGB1P09429 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB1P09429 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB1P09429 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB1P09429 TERF1P1-201ENST00000311003 1181 ntBASIC21.6■■□□□ 1.05
HMGB1P09429 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB1P09429 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB1P09429 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGB1P09429 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.6■■□□□ 1.05
HMGB1P09429 BX664615.1-201ENST00000443558 458 ntBASIC21.6■■□□□ 1.05
HMGB1P09429 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB1P09429 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGB1P09429 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.6■■□□□ 1.05
HMGB1P09429 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
HMGB1P09429 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGB1P09429 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB1P09429 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB1P09429 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB1P09429 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB1P09429 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.59■■□□□ 1.05
HMGB1P09429 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
HMGB1P09429 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
HMGB1P09429 AC093010.1-201ENST00000473625 1624 ntBASIC21.59■■□□□ 1.05
HMGB1P09429 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGB1P09429 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGB1P09429 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGB1P09429 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
HMGB1P09429 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.59■■□□□ 1.05
HMGB1P09429 SLC25A6P5-201ENST00000435663 894 ntBASIC21.59■■□□□ 1.05
HMGB1P09429 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGB1P09429 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGB1P09429 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.59■■□□□ 1.05
HMGB1P09429 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
HMGB1P09429 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGB1P09429 AC073508.3-201ENST00000619697 1419 ntBASIC21.59■■□□□ 1.05
HMGB1P09429 AL157888.1-201ENST00000631930 593 ntBASIC21.59■■□□□ 1.05
HMGB1P09429 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB1P09429 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
HMGB1P09429 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB1P09429 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB1P09429 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.58■■□□□ 1.05
HMGB1P09429 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGB1P09429 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB1P09429 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGB1P09429 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
HMGB1P09429 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB1P09429 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB1P09429 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
HMGB1P09429 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.58■■□□□ 1.05
HMGB1P09429 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
HMGB1P09429 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.58■■□□□ 1.05
HMGB1P09429 AC211429.1-201ENST00000415277 523 ntBASIC21.58■■□□□ 1.05
HMGB1P09429 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGB1P09429 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGB1P09429 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
HMGB1P09429 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGB1P09429 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.58■■□□□ 1.05
HMGB1P09429 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
HMGB1P09429 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGB1P09429 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
HMGB1P09429 LINC01023-201ENST00000606054 436 ntBASIC21.58■■□□□ 1.05
HMGB1P09429 AL023973.1-201ENST00000624619 620 ntBASIC21.58■■□□□ 1.05
HMGB1P09429 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms