Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
COL2A1P02458 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
COL2A1P02458 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
COL2A1P02458 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
COL2A1P02458 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL2A1P02458 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
COL2A1P02458 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
COL2A1P02458 AP005117.1-201ENST00000584346 1413 ntBASIC21.31■■□□□ 1
COL2A1P02458 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
COL2A1P02458 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC21.31■■□□□ 1
COL2A1P02458 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL2A1P02458 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21.31■■□□□ 1
COL2A1P02458 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
COL2A1P02458 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
COL2A1P02458 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL2A1P02458 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
COL2A1P02458 AC093010.1-201ENST00000473625 1624 ntBASIC21.3■■□□□ 1
COL2A1P02458 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
COL2A1P02458 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
COL2A1P02458 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
COL2A1P02458 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
COL2A1P02458 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
COL2A1P02458 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC21.3■■□□□ 1
COL2A1P02458 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COL2A1P02458 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC21.3■■□□□ 1
COL2A1P02458 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
COL2A1P02458 PMS2P1-201ENST00000431037 1228 ntBASIC21.3■■□□□ 1
COL2A1P02458 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC21.3■■□□□ 1
COL2A1P02458 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL2A1P02458 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC21.3■■□□□ 1
COL2A1P02458 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC21.3■■□□□ 1
COL2A1P02458 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC21.3■■□□□ 1
COL2A1P02458 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC21.3■■□□□ 1
COL2A1P02458 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC21.3■■□□□ 1
COL2A1P02458 NME4-212ENST00000621774 904 ntTSL 3 BASIC21.3■■□□□ 1
COL2A1P02458 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL2A1P02458 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL2A1P02458 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.3■■□□□ 1
COL2A1P02458 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
COL2A1P02458 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
COL2A1P02458 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.3■■□□□ 1
COL2A1P02458 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COL2A1P02458 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL2A1P02458 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
COL2A1P02458 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.29■■□□□ 1
COL2A1P02458 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC21.29■■□□□ 1
COL2A1P02458 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.29■■□□□ 1
COL2A1P02458 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL2A1P02458 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC21.29■■□□□ 1
COL2A1P02458 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC21.29■■□□□ 1
COL2A1P02458 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL2A1P02458 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC21.29■■□□□ 1
COL2A1P02458 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.29■■□□□ 1
COL2A1P02458 AL139288.1-201ENST00000623748 933 ntBASIC21.29■■□□□ 1
COL2A1P02458 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC21.29■■□□□ 1
COL2A1P02458 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL2A1P02458 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.29■■□□□ 1
COL2A1P02458 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
COL2A1P02458 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL2A1P02458 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
COL2A1P02458 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC21.28■■□□□ 1
COL2A1P02458 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
COL2A1P02458 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL2A1P02458 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.28■■□□□ 1
COL2A1P02458 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.28■■□□□ 1
COL2A1P02458 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL2A1P02458 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC21.28■■□□□ 1
COL2A1P02458 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL2A1P02458 SLC25A1P1-201ENST00000528351 927 ntBASIC21.28■■□□□ 1
COL2A1P02458 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL2A1P02458 PAM16-208ENST00000573553 722 ntTSL 2 BASIC21.28■■□□□ 1
COL2A1P02458 MTDHP3-201ENST00000594186 672 ntBASIC21.28■■□□□ 1
COL2A1P02458 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
COL2A1P02458 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC21.28■■□□□ 1
COL2A1P02458 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.28■■□□□ 1
COL2A1P02458 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
COL2A1P02458 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL2A1P02458 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL2A1P02458 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.28■■□□□ 1
COL2A1P02458 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC21.27■■□□□ 1
COL2A1P02458 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC21.27■■□□□ 1
COL2A1P02458 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
COL2A1P02458 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.27■■□□□ 1
COL2A1P02458 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.27■■□□□ 1
COL2A1P02458 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.27■■□□□ 1
COL2A1P02458 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
COL2A1P02458 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.27■■□□□ 1
COL2A1P02458 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms