Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXC11O43248 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.62■□□□□ 0.57
HOXC11O43248 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC11O43248 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC11O43248 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
HOXC11O43248 AL121912.1-201ENST00000603683 238 ntBASIC18.62■□□□□ 0.57
HOXC11O43248 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXC11O43248 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.62■□□□□ 0.57
HOXC11O43248 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXC11O43248 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.62■□□□□ 0.57
HOXC11O43248 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXC11O43248 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.61■□□□□ 0.57
HOXC11O43248 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
HOXC11O43248 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
HOXC11O43248 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXC11O43248 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.61■□□□□ 0.57
HOXC11O43248 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.61■□□□□ 0.57
HOXC11O43248 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXC11O43248 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXC11O43248 AC068472.1-201ENST00000474589 881 ntBASIC18.61■□□□□ 0.57
HOXC11O43248 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.61■□□□□ 0.57
HOXC11O43248 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.61■□□□□ 0.57
HOXC11O43248 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.61■□□□□ 0.57
HOXC11O43248 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.61■□□□□ 0.57
HOXC11O43248 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HOXC11O43248 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXC11O43248 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.61■□□□□ 0.57
HOXC11O43248 REXO1L6P-202ENST00000619970 1078 ntBASIC18.61■□□□□ 0.57
HOXC11O43248 AC009154.2-201ENST00000621177 724 ntBASIC18.61■□□□□ 0.57
HOXC11O43248 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HOXC11O43248 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.61■□□□□ 0.57
HOXC11O43248 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXC11O43248 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
HOXC11O43248 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HOXC11O43248 AC099343.3-201ENST00000605834 2503 ntBASIC18.61■□□□□ 0.57
HOXC11O43248 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HOXC11O43248 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC11O43248 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC11O43248 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
HOXC11O43248 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.6■□□□□ 0.57
HOXC11O43248 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
HOXC11O43248 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HOXC11O43248 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC11O43248 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC11O43248 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.6■□□□□ 0.57
HOXC11O43248 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC11O43248 SAPCD2P3-201ENST00000455031 850 ntBASIC18.6■□□□□ 0.57
HOXC11O43248 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.6■□□□□ 0.57
HOXC11O43248 AC106795.1-205ENST00000512851 1056 ntBASIC18.6■□□□□ 0.57
HOXC11O43248 AP002469.2-201ENST00000531724 424 ntBASIC18.6■□□□□ 0.57
HOXC11O43248 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.6■□□□□ 0.57
HOXC11O43248 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.6■□□□□ 0.57
HOXC11O43248 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 AC114341.1-201ENST00000618070 349 ntBASIC18.6■□□□□ 0.57
HOXC11O43248 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC11O43248 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.6■□□□□ 0.57
HOXC11O43248 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 LINC01126-201ENST00000623515 1646 ntBASIC18.6■□□□□ 0.57
HOXC11O43248 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC11O43248 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.59■□□□□ 0.57
HOXC11O43248 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HOXC11O43248 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HOXC11O43248 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HOXC11O43248 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC11O43248 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.59■□□□□ 0.57
HOXC11O43248 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.59■□□□□ 0.57
HOXC11O43248 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
HOXC11O43248 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.59■□□□□ 0.57
HOXC11O43248 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms