Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV3S1A0A5B6 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV3S1A0A5B6 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV3S1A0A5B6 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV3S1A0A5B6 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV3S1A0A5B6 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV3S1A0A5B6 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.17■□□□□ 0.34
TCRBV3S1A0A5B6 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 MIR663A-201ENST00000385250 93 ntBASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 AC097658.1-201ENST00000475555 843 ntBASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 PRKY-204ENST00000533551 1019 ntBASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV3S1A0A5B6 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 KRT8P50-201ENST00000562022 1438 ntBASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.15■□□□□ 0.34
TCRBV3S1A0A5B6 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.34
TCRBV3S1A0A5B6 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.14■□□□□ 0.34
TCRBV3S1A0A5B6 AC018695.7-201ENST00000624587 2492 ntBASIC17.14■□□□□ 0.34
TCRBV3S1A0A5B6 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 CROCCP2-202ENST00000412962 2773 ntBASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 MIR564-202ENST00000385049 94 ntBASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 CDCA4P2-201ENST00000441182 718 ntBASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TCRBV3S1A0A5B6 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
TCRBV3S1A0A5B6 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TCRBV3S1A0A5B6 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.13■□□□□ 0.33
TCRBV3S1A0A5B6 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms