Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 AKR1C7P-201ENST00000305623 895 ntBASIC18.85■□□□□ 0.61
TDP1Q9NUW8 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 AC106795.1-205ENST00000512851 1056 ntBASIC18.85■□□□□ 0.61
TDP1Q9NUW8 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 BNIP3P18-201ENST00000593976 575 ntBASIC18.85■□□□□ 0.61
TDP1Q9NUW8 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
TDP1Q9NUW8 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 AC068472.1-201ENST00000474589 881 ntBASIC18.84■□□□□ 0.61
TDP1Q9NUW8 AL662844.1-201ENST00000546340 181 ntBASIC18.84■□□□□ 0.61
TDP1Q9NUW8 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.84■□□□□ 0.61
TDP1Q9NUW8 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TDP1Q9NUW8 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 MIR5100-201ENST00000579544 119 ntBASIC18.83■□□□□ 0.6
TDP1Q9NUW8 SLC25A6P4-201ENST00000586535 553 ntBASIC18.83■□□□□ 0.6
TDP1Q9NUW8 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 AL591684.3-201ENST00000605187 298 ntBASIC18.83■□□□□ 0.6
TDP1Q9NUW8 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TDP1Q9NUW8 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.82■□□□□ 0.6
TDP1Q9NUW8 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms