Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AC006504.4-201ENST00000592118 1568 ntBASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 DDX43P3-201ENST00000441064 443 ntBASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 AC125807.1-201ENST00000483097 614 ntBASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.46■□□□□ 0.55
COL25A1Q9BXS0 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.46■□□□□ 0.54
COL25A1Q9BXS0 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 AL512353.2-201ENST00000448759 1962 ntBASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 MIR658-201ENST00000385210 100 ntBASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 AC092933.1-201ENST00000393644 945 ntBASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 RHOQP3-201ENST00000437982 621 ntBASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 MTCL1P1-201ENST00000446207 792 ntBASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 AC008667.4-201ENST00000607370 168 ntBASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.45■□□□□ 0.54
COL25A1Q9BXS0 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 PRYP5-201ENST00000451909 266 ntBASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 ACA64.2-201ENST00000459014 129 ntBASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 AC113404.2-201ENST00000507884 177 ntBASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 AL512356.2-201ENST00000546955 174 ntBASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL25A1Q9BXS0 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 AC140878.1-201ENST00000565277 250 ntBASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 AC010654.1-201ENST00000615722 808 ntBASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 AC004706.3-202ENST00000621574 984 ntBASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL25A1Q9BXS0 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL25A1Q9BXS0 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL25A1Q9BXS0 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.42■□□□□ 0.54
COL25A1Q9BXS0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.42■□□□□ 0.54
COL25A1Q9BXS0 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms