Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 MIR574-201ENST00000385209 96 ntBASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 AP001269.4-201ENST00000609611 512 ntBASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 ASL-204ENST00000395331 1538 ntTSL 5 BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
USHBP1Q8N6Y0 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 FGFR3P6-201ENST00000457012 610 ntBASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USHBP1Q8N6Y0 AC112777.1-201ENST00000540175 1423 ntBASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 TLE1-202ENST00000376484 666 ntTSL 3 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 HNRNPDP1-201ENST00000439535 754 ntBASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 MEG3-211ENST00000452514 461 ntTSL 3 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 AC018712.1-201ENST00000455767 687 ntBASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 ANKRD20A8P-203ENST00000641373 517 ntBASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
USHBP1Q8N6Y0 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 AF186996.4-201ENST00000467186 377 ntBASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 PAM16-208ENST00000573553 722 ntTSL 2 BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 AC064862.7-201ENST00000604520 867 ntBASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC24.09■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms