Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RNFT1Q5M7Z0 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.5■□□□□ 0.23
RNFT1Q5M7Z0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.5■□□□□ 0.23
RNFT1Q5M7Z0 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.5■□□□□ 0.23
RNFT1Q5M7Z0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 NUS1P2-201ENST00000417358 873 ntBASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 VENTXP7-201ENST00000475503 772 ntBASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 AC113404.2-201ENST00000507884 177 ntBASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 AL160237.2-201ENST00000556165 472 ntBASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RNFT1Q5M7Z0 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 AKR1C7P-201ENST00000305623 895 ntBASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 MINOS1P3-201ENST00000457048 203 ntBASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
RNFT1Q5M7Z0 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 AP000347.1-202ENST00000435868 847 ntBASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 BNIP3P18-201ENST00000593976 575 ntBASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 LINC01126-201ENST00000623515 1646 ntBASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
RNFT1Q5M7Z0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms