Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 KRT18P67-201ENST00000432816 1264 ntBASIC17.61■□□□□ 0.41
COL28A1Q2UY09 AC244107.1-201ENST00000442033 332 ntBASIC17.61■□□□□ 0.41
COL28A1Q2UY09 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 AF186996.4-201ENST00000467186 377 ntBASIC17.61■□□□□ 0.41
COL28A1Q2UY09 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 MIR3197-201ENST00000582241 73 ntBASIC17.61■□□□□ 0.41
COL28A1Q2UY09 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 ZNF259P1-201ENST00000407656 1365 ntBASIC17.61■□□□□ 0.41
COL28A1Q2UY09 AC233702.3-201ENST00000578656 1387 ntBASIC17.61■□□□□ 0.41
COL28A1Q2UY09 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 SDHAP1-207ENST00000440850 2000 ntBASIC17.6■□□□□ 0.41
COL28A1Q2UY09 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 AC009065.1-201ENST00000564055 1225 ntBASIC17.6■□□□□ 0.41
COL28A1Q2UY09 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 Z69720.1-201ENST00000601483 472 ntBASIC17.6■□□□□ 0.41
COL28A1Q2UY09 IGHV3-41-201ENST00000613121 348 ntBASIC17.6■□□□□ 0.41
COL28A1Q2UY09 AC148477.8-201ENST00000624298 468 ntBASIC17.6■□□□□ 0.41
COL28A1Q2UY09 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL28A1Q2UY09 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 PGAM5P1-201ENST00000518923 814 ntBASIC17.59■□□□□ 0.41
COL28A1Q2UY09 AC090616.6-201ENST00000582640 721 ntBASIC17.59■□□□□ 0.41
COL28A1Q2UY09 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 AL157888.1-201ENST00000631930 593 ntBASIC17.59■□□□□ 0.41
COL28A1Q2UY09 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.59■□□□□ 0.41
COL28A1Q2UY09 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL28A1Q2UY09 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL28A1Q2UY09 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.58■□□□□ 0.41
COL28A1Q2UY09 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.58■□□□□ 0.41
COL28A1Q2UY09 Z83836.1-201ENST00000624605 1642 ntBASIC17.58■□□□□ 0.41
COL28A1Q2UY09 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms