Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGCS2P54868 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HMGCS2P54868 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGCS2P54868 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
HMGCS2P54868 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC21.14■□□□□ 0.98
HMGCS2P54868 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.14■□□□□ 0.98
HMGCS2P54868 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.14■□□□□ 0.98
HMGCS2P54868 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
HMGCS2P54868 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
HMGCS2P54868 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
HMGCS2P54868 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCS2P54868 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC21.14■□□□□ 0.97
HMGCS2P54868 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.14■□□□□ 0.97
HMGCS2P54868 FGFR3P6-201ENST00000457012 610 ntBASIC21.14■□□□□ 0.97
HMGCS2P54868 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
HMGCS2P54868 RNPS1P1-201ENST00000507437 918 ntBASIC21.14■□□□□ 0.97
HMGCS2P54868 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.14■□□□□ 0.97
HMGCS2P54868 MIR7706-201ENST00000613747 67 ntBASIC21.14■□□□□ 0.97
HMGCS2P54868 AC117500.6-201ENST00000624871 588 ntBASIC21.14■□□□□ 0.97
HMGCS2P54868 AL499627.1-201ENST00000569373 2188 ntBASIC21.14■□□□□ 0.97
HMGCS2P54868 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCS2P54868 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCS2P54868 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCS2P54868 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
HMGCS2P54868 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCS2P54868 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HMGCS2P54868 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
HMGCS2P54868 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCS2P54868 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCS2P54868 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCS2P54868 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCS2P54868 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
HMGCS2P54868 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCS2P54868 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
HMGCS2P54868 HIST2H3DP1-201ENST00000401004 416 ntBASIC21.13■□□□□ 0.97
HMGCS2P54868 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGCS2P54868 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.13■□□□□ 0.97
HMGCS2P54868 AC093909.1-201ENST00000504731 1122 ntBASIC21.13■□□□□ 0.97
HMGCS2P54868 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCS2P54868 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC21.13■□□□□ 0.97
HMGCS2P54868 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGCS2P54868 MTDHP3-201ENST00000594186 672 ntBASIC21.13■□□□□ 0.97
HMGCS2P54868 AP001269.4-201ENST00000609611 512 ntBASIC21.13■□□□□ 0.97
HMGCS2P54868 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC21.13■□□□□ 0.97
HMGCS2P54868 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCS2P54868 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGCS2P54868 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCS2P54868 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGCS2P54868 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGCS2P54868 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGCS2P54868 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGCS2P54868 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGCS2P54868 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGCS2P54868 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGCS2P54868 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
HMGCS2P54868 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC21.12■□□□□ 0.97
HMGCS2P54868 RPP21-221ENST00000428040 594 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGCS2P54868 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 MTCL1P1-201ENST00000446207 792 ntBASIC21.12■□□□□ 0.97
HMGCS2P54868 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.12■□□□□ 0.97
HMGCS2P54868 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC21.12■□□□□ 0.97
HMGCS2P54868 AC073648.2-201ENST00000510116 352 ntBASIC21.12■□□□□ 0.97
HMGCS2P54868 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC21.12■□□□□ 0.97
HMGCS2P54868 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGCS2P54868 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HMGCS2P54868 COX5A-204ENST00000567270 579 ntTSL 3 BASIC21.12■□□□□ 0.97
HMGCS2P54868 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.12■□□□□ 0.97
HMGCS2P54868 AC139530.3-201ENST00000620344 690 ntBASIC21.12■□□□□ 0.97
HMGCS2P54868 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
HMGCS2P54868 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HMGCS2P54868 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 LINC00602-201ENST00000629776 2065 ntBASIC21.12■□□□□ 0.97
HMGCS2P54868 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
HMGCS2P54868 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGCS2P54868 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGCS2P54868 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.11■□□□□ 0.97
HMGCS2P54868 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
HMGCS2P54868 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.11■□□□□ 0.97
HMGCS2P54868 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGCS2P54868 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGCS2P54868 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC21.11■□□□□ 0.97
HMGCS2P54868 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.11■□□□□ 0.97
HMGCS2P54868 RBM17P3-201ENST00000417687 1192 ntBASIC21.11■□□□□ 0.97
HMGCS2P54868 HNRNPDP1-201ENST00000439535 754 ntBASIC21.11■□□□□ 0.97
HMGCS2P54868 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.11■□□□□ 0.97
HMGCS2P54868 KRT18P58-201ENST00000527480 1120 ntBASIC21.11■□□□□ 0.97
HMGCS2P54868 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGCS2P54868 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
HMGCS2P54868 AC009154.2-201ENST00000621177 724 ntBASIC21.11■□□□□ 0.97
HMGCS2P54868 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms