Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.28■□□□□ 0.68
LIG3P49916 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
LIG3P49916 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 ABALON-201ENST00000629058 1903 ntBASIC19.28■□□□□ 0.68
LIG3P49916 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.28■□□□□ 0.68
LIG3P49916 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LIG3P49916 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.28■□□□□ 0.68
LIG3P49916 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.28■□□□□ 0.68
LIG3P49916 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.28■□□□□ 0.68
LIG3P49916 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.28■□□□□ 0.68
LIG3P49916 AC097488.1-201ENST00000507834 756 ntBASIC19.28■□□□□ 0.68
LIG3P49916 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.28■□□□□ 0.68
LIG3P49916 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.28■□□□□ 0.68
LIG3P49916 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.28■□□□□ 0.68
LIG3P49916 LINC01023-201ENST00000606054 436 ntBASIC19.28■□□□□ 0.68
LIG3P49916 AP000692.2-201ENST00000608391 879 ntBASIC19.28■□□□□ 0.68
LIG3P49916 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.28■□□□□ 0.68
LIG3P49916 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.28■□□□□ 0.68
LIG3P49916 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 FP475955.4-201ENST00000623131 1990 ntBASIC19.28■□□□□ 0.68
LIG3P49916 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIG3P49916 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.28■□□□□ 0.68
LIG3P49916 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.28■□□□□ 0.68
LIG3P49916 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.28■□□□□ 0.68
LIG3P49916 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
LIG3P49916 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.27■□□□□ 0.68
LIG3P49916 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.27■□□□□ 0.68
LIG3P49916 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.27■□□□□ 0.68
LIG3P49916 Z98044.1-201ENST00000632503 1764 ntBASIC19.27■□□□□ 0.68
LIG3P49916 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.27■□□□□ 0.68
LIG3P49916 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
LIG3P49916 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIG3P49916 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIG3P49916 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
LIG3P49916 FAM207BP-201ENST00000447172 505 ntBASIC19.27■□□□□ 0.68
LIG3P49916 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.27■□□□□ 0.68
LIG3P49916 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.27■□□□□ 0.68
LIG3P49916 SLC25A1P4-201ENST00000567977 778 ntBASIC19.27■□□□□ 0.68
LIG3P49916 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.27■□□□□ 0.68
LIG3P49916 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
LIG3P49916 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIG3P49916 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
LIG3P49916 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
LIG3P49916 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.27■□□□□ 0.67
LIG3P49916 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LIG3P49916 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
LIG3P49916 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIG3P49916 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIG3P49916 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.27■□□□□ 0.67
LIG3P49916 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.26■□□□□ 0.67
LIG3P49916 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.26■□□□□ 0.67
LIG3P49916 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
LIG3P49916 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.26■□□□□ 0.67
LIG3P49916 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
LIG3P49916 KRT8P41-201ENST00000533985 1514 ntBASIC19.26■□□□□ 0.67
LIG3P49916 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
LIG3P49916 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 ZNF815P-204ENST00000434898 1737 ntBASIC19.26■□□□□ 0.67
LIG3P49916 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.26■□□□□ 0.67
LIG3P49916 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
LIG3P49916 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
LIG3P49916 CRYGFP-201ENST00000418459 633 ntBASIC19.26■□□□□ 0.67
LIG3P49916 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.26■□□□□ 0.67
LIG3P49916 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.26■□□□□ 0.67
LIG3P49916 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
LIG3P49916 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.26■□□□□ 0.67
LIG3P49916 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.26■□□□□ 0.67
LIG3P49916 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
LIG3P49916 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
LIG3P49916 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 AC104417.2-201ENST00000562989 1793 ntBASIC19.26■□□□□ 0.67
LIG3P49916 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIG3P49916 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.26■□□□□ 0.67
LIG3P49916 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LIG3P49916 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.25■□□□□ 0.67
LIG3P49916 ESPNP-201ENST00000270691 2015 ntBASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms