Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC15.04■□□□□ -0
NKX2-1P43699 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
NKX2-1P43699 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC15.04■□□□□ -0
NKX2-1P43699 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC15.04■□□□□ -0
NKX2-1P43699 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC15.04■□□□□ -0
NKX2-1P43699 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC15.04■□□□□ -0
NKX2-1P43699 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 AC108860.2-201ENST00000562760 2183 ntBASIC15.04■□□□□ -0
NKX2-1P43699 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.04■□□□□ -0
NKX2-1P43699 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX2-1P43699 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.04■□□□□ -0
NKX2-1P43699 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC15.03■□□□□ -0
NKX2-1P43699 MYLKP1-201ENST00000509077 1580 ntBASIC15.03■□□□□ -0
NKX2-1P43699 KRT8P41-201ENST00000533985 1514 ntBASIC15.03■□□□□ -0
NKX2-1P43699 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
NKX2-1P43699 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
NKX2-1P43699 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 MIR663A-201ENST00000385250 93 ntBASIC15.03■□□□□ -0
NKX2-1P43699 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC15.03■□□□□ -0
NKX2-1P43699 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC15.03■□□□□ -0
NKX2-1P43699 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC15.03■□□□□ -0
NKX2-1P43699 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC15.03■□□□□ -0
NKX2-1P43699 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC15.03■□□□□ -0
NKX2-1P43699 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC15.03■□□□□ -0
NKX2-1P43699 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
NKX2-1P43699 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC15.03■□□□□ -0
NKX2-1P43699 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 AC080080.1-201ENST00000625121 2420 ntBASIC15.03■□□□□ -0
NKX2-1P43699 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.03■□□□□ -0
NKX2-1P43699 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC15.03■□□□□ -0
NKX2-1P43699 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC15.03■□□□□ -0
NKX2-1P43699 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
NKX2-1P43699 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
NKX2-1P43699 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
NKX2-1P43699 KRT8P3-201ENST00000519669 1449 ntBASIC15.02■□□□□ -0
NKX2-1P43699 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
NKX2-1P43699 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC15.02■□□□□ -0
NKX2-1P43699 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
NKX2-1P43699 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
NKX2-1P43699 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
NKX2-1P43699 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
NKX2-1P43699 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC15.02■□□□□ -0
NKX2-1P43699 AC006970.2-201ENST00000450065 779 ntBASIC15.02■□□□□ -0
NKX2-1P43699 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC15.02■□□□□ -0
NKX2-1P43699 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC15.02■□□□□ -0
NKX2-1P43699 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC15.02■□□□□ -0
NKX2-1P43699 MNT-208ENST00000575394 606 ntTSL 4 BASIC15.02■□□□□ -0
NKX2-1P43699 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC15.02■□□□□ -0
NKX2-1P43699 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC15.02■□□□□ -0
NKX2-1P43699 HLA-B-256ENST00000639848 1089 ntBASIC15.02■□□□□ -0
NKX2-1P43699 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.02□□□□□ -0.01
NKX2-1P43699 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
NKX2-1P43699 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
NKX2-1P43699 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.02□□□□□ -0.01
NKX2-1P43699 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
NKX2-1P43699 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
NKX2-1P43699 STK4-201ENST00000372801 2038 ntTSL 2 BASIC15.02□□□□□ -0.01
NKX2-1P43699 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.02□□□□□ -0.01
NKX2-1P43699 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.02□□□□□ -0.01
NKX2-1P43699 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX2-1P43699 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX2-1P43699 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX2-1P43699 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NKX2-1P43699 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX2-1P43699 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.01□□□□□ -0.01
NKX2-1P43699 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX2-1P43699 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC15.01□□□□□ -0.01
NKX2-1P43699 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX2-1P43699 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
NKX2-1P43699 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC15.01□□□□□ -0.01
NKX2-1P43699 AC091874.3-201ENST00000512672 1195 ntBASIC15.01□□□□□ -0.01
NKX2-1P43699 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC15.01□□□□□ -0.01
NKX2-1P43699 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC15.01□□□□□ -0.01
NKX2-1P43699 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NKX2-1P43699 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC15.01□□□□□ -0.01
NKX2-1P43699 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC15.01□□□□□ -0.01
NKX2-1P43699 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
NKX2-1P43699 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
NKX2-1P43699 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms