Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HOXD3P31249 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HOXD3P31249 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 AC112777.1-201ENST00000540175 1423 ntBASIC14.19□□□□□ -0.14
HOXD3P31249 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
HOXD3P31249 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXD3P31249 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
HOXD3P31249 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXD3P31249 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.19□□□□□ -0.14
HOXD3P31249 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.19□□□□□ -0.14
HOXD3P31249 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.19□□□□□ -0.14
HOXD3P31249 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.19□□□□□ -0.14
HOXD3P31249 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC14.19□□□□□ -0.14
HOXD3P31249 MIR3180-4-201ENST00000582223 153 ntBASIC14.19□□□□□ -0.14
HOXD3P31249 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
HOXD3P31249 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXD3P31249 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HOXD3P31249 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HOXD3P31249 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXD3P31249 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HOXD3P31249 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HOXD3P31249 ANO7L1-203ENST00000602586 1720 ntBASIC14.18□□□□□ -0.14
HOXD3P31249 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 AC093525.10-201ENST00000625130 1569 ntBASIC14.18□□□□□ -0.14
HOXD3P31249 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD3P31249 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
HOXD3P31249 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
HOXD3P31249 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.18□□□□□ -0.14
HOXD3P31249 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
HOXD3P31249 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXD3P31249 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD3P31249 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 AC246785.2-201ENST00000432512 513 ntBASIC14.18□□□□□ -0.14
HOXD3P31249 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXD3P31249 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD3P31249 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXD3P31249 AL121672.3-201ENST00000608644 468 ntBASIC14.18□□□□□ -0.14
HOXD3P31249 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD3P31249 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HOXD3P31249 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HOXD3P31249 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXD3P31249 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXD3P31249 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD3P31249 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXD3P31249 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
HOXD3P31249 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 AL845331.1-201ENST00000424978 1190 ntBASIC14.17□□□□□ -0.14
HOXD3P31249 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC14.17□□□□□ -0.14
HOXD3P31249 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.17□□□□□ -0.14
HOXD3P31249 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC14.17□□□□□ -0.14
HOXD3P31249 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 RN7SL510P-201ENST00000581311 263 ntBASIC14.17□□□□□ -0.14
HOXD3P31249 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms