Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC1P18827 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SDC1P18827 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC1P18827 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SDC1P18827 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
SDC1P18827 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC1P18827 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SDC1P18827 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
SDC1P18827 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SDC1P18827 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SDC1P18827 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
SDC1P18827 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.49■□□□□ 0.39
SDC1P18827 CCR12P-201ENST00000446203 998 ntBASIC17.49■□□□□ 0.39
SDC1P18827 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.49■□□□□ 0.39
SDC1P18827 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.49■□□□□ 0.39
SDC1P18827 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.49■□□□□ 0.39
SDC1P18827 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
SDC1P18827 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.49■□□□□ 0.39
SDC1P18827 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SDC1P18827 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
SDC1P18827 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
SDC1P18827 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.49■□□□□ 0.39
SDC1P18827 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.49■□□□□ 0.39
SDC1P18827 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SDC1P18827 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.49■□□□□ 0.39
SDC1P18827 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDC1P18827 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.48■□□□□ 0.39
SDC1P18827 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SDC1P18827 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.48■□□□□ 0.39
SDC1P18827 MIR1238-201ENST00000408483 83 ntBASIC17.48■□□□□ 0.39
SDC1P18827 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.48■□□□□ 0.39
SDC1P18827 AC007663.1-201ENST00000438948 1240 ntBASIC17.48■□□□□ 0.39
SDC1P18827 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.48■□□□□ 0.39
SDC1P18827 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 SNORA78-201ENST00000459373 127 ntBASIC17.48■□□□□ 0.39
SDC1P18827 BX088651.1-201ENST00000540551 451 ntBASIC17.48■□□□□ 0.39
SDC1P18827 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SDC1P18827 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SDC1P18827 GNAS-203ENST00000306120 1878 ntBASIC17.48■□□□□ 0.39
SDC1P18827 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDC1P18827 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.48■□□□□ 0.39
SDC1P18827 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SDC1P18827 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.47■□□□□ 0.39
SDC1P18827 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.47■□□□□ 0.39
SDC1P18827 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.47■□□□□ 0.39
SDC1P18827 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.47■□□□□ 0.39
SDC1P18827 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.47■□□□□ 0.39
SDC1P18827 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.47■□□□□ 0.39
SDC1P18827 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.47■□□□□ 0.39
SDC1P18827 AL355075.4-201ENST00000554988 638 ntBASIC17.47■□□□□ 0.39
SDC1P18827 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 AC116562.4-202ENST00000641738 218 ntBASIC17.47■□□□□ 0.39
SDC1P18827 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDC1P18827 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms