Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGA1P17096 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.99■□□□□ 0.63
HMGA1P17096 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGA1P17096 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.98■□□□□ 0.63
HMGA1P17096 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGA1P17096 POM121L3P-201ENST00000419331 1163 ntBASIC18.98■□□□□ 0.63
HMGA1P17096 AC009078.2-202ENST00000463353 338 ntBASIC18.98■□□□□ 0.63
HMGA1P17096 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.98■□□□□ 0.63
HMGA1P17096 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
HMGA1P17096 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGA1P17096 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
HMGA1P17096 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HMGA1P17096 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
HMGA1P17096 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGA1P17096 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGA1P17096 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGA1P17096 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGA1P17096 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGA1P17096 AL160237.2-201ENST00000556165 472 ntBASIC18.97■□□□□ 0.63
HMGA1P17096 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGA1P17096 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGA1P17096 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGA1P17096 AC126763.1-201ENST00000552015 2118 ntBASIC18.97■□□□□ 0.63
HMGA1P17096 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGA1P17096 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGA1P17096 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGA1P17096 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGA1P17096 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HMGA1P17096 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGA1P17096 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGA1P17096 MTCL1P1-201ENST00000446207 792 ntBASIC18.96■□□□□ 0.63
HMGA1P17096 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGA1P17096 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.96■□□□□ 0.63
HMGA1P17096 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.96■□□□□ 0.63
HMGA1P17096 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGA1P17096 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.96■□□□□ 0.63
HMGA1P17096 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.96■□□□□ 0.63
HMGA1P17096 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGA1P17096 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGA1P17096 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.96■□□□□ 0.63
HMGA1P17096 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGA1P17096 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.96■□□□□ 0.63
HMGA1P17096 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
HMGA1P17096 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGA1P17096 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGA1P17096 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGA1P17096 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
HMGA1P17096 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.96■□□□□ 0.63
HMGA1P17096 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGA1P17096 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.96■□□□□ 0.63
HMGA1P17096 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGA1P17096 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
HMGA1P17096 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGA1P17096 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGA1P17096 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.95■□□□□ 0.62
HMGA1P17096 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGA1P17096 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HMGA1P17096 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGA1P17096 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGA1P17096 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.95■□□□□ 0.62
HMGA1P17096 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.95■□□□□ 0.62
HMGA1P17096 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.95■□□□□ 0.62
HMGA1P17096 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
HMGA1P17096 MIR5100-201ENST00000579544 119 ntBASIC18.95■□□□□ 0.62
HMGA1P17096 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms