Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.89■□□□□ 0.61
VCANP13611 AC073621.1-201ENST00000392730 636 ntBASIC18.89■□□□□ 0.61
VCANP13611 PMS2P4-201ENST00000412466 1052 ntBASIC18.89■□□□□ 0.61
VCANP13611 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.89■□□□□ 0.61
VCANP13611 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.89■□□□□ 0.61
VCANP13611 MTDHP4-201ENST00000600287 670 ntBASIC18.89■□□□□ 0.61
VCANP13611 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VCANP13611 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.88■□□□□ 0.61
VCANP13611 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCANP13611 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCANP13611 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCANP13611 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.88■□□□□ 0.61
VCANP13611 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCANP13611 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.88■□□□□ 0.61
VCANP13611 DUX4L27-201ENST00000554796 1261 ntBASIC18.88■□□□□ 0.61
VCANP13611 AL512408.1-201ENST00000569378 2000 ntBASIC18.88■□□□□ 0.61
VCANP13611 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.88■□□□□ 0.61
VCANP13611 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCANP13611 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCANP13611 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCANP13611 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.88■□□□□ 0.61
VCANP13611 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.88■□□□□ 0.61
VCANP13611 ABCD1P5-201ENST00000445663 754 ntBASIC18.88■□□□□ 0.61
VCANP13611 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.88■□□□□ 0.61
VCANP13611 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCANP13611 AC025048.6-201ENST00000634326 1161 ntBASIC18.88■□□□□ 0.61
VCANP13611 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
VCANP13611 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.88■□□□□ 0.61
VCANP13611 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.88■□□□□ 0.61
VCANP13611 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VCANP13611 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VCANP13611 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VCANP13611 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.87■□□□□ 0.61
VCANP13611 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.87■□□□□ 0.61
VCANP13611 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.87■□□□□ 0.61
VCANP13611 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCANP13611 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.87■□□□□ 0.61
VCANP13611 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.87■□□□□ 0.61
VCANP13611 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VCANP13611 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VCANP13611 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.87■□□□□ 0.61
VCANP13611 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VCANP13611 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VCANP13611 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.87■□□□□ 0.61
VCANP13611 LINC01126-201ENST00000623515 1646 ntBASIC18.87■□□□□ 0.61
VCANP13611 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VCANP13611 AL512353.2-201ENST00000448759 1962 ntBASIC18.87■□□□□ 0.61
VCANP13611 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VCANP13611 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VCANP13611 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCANP13611 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VCANP13611 AC104390.1-201ENST00000555663 520 ntBASIC18.87■□□□□ 0.61
VCANP13611 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
VCANP13611 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VCANP13611 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VCANP13611 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VCANP13611 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
VCANP13611 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VCANP13611 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VCANP13611 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VCANP13611 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VCANP13611 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VCANP13611 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.86■□□□□ 0.61
VCANP13611 CRB3P1-201ENST00000449338 276 ntBASIC18.86■□□□□ 0.61
VCANP13611 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.86■□□□□ 0.61
VCANP13611 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.86■□□□□ 0.61
VCANP13611 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VCANP13611 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VCANP13611 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VCANP13611 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VCANP13611 AC006128.1-201ENST00000624704 1661 ntBASIC18.86■□□□□ 0.61
VCANP13611 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 AC018845.2-201ENST00000568326 409 ntBASIC18.85■□□□□ 0.61
VCANP13611 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
VCANP13611 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VCANP13611 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.85■□□□□ 0.61
VCANP13611 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.85■□□□□ 0.61
VCANP13611 TFAMP1-201ENST00000412727 736 ntBASIC18.85■□□□□ 0.61
VCANP13611 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.85■□□□□ 0.61
VCANP13611 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 AC073314.1-201ENST00000568729 2216 ntBASIC18.85■□□□□ 0.61
VCANP13611 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.85■□□□□ 0.61
VCANP13611 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.85■□□□□ 0.61
VCANP13611 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VCANP13611 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.85■□□□□ 0.61
VCANP13611 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VCANP13611 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.85■□□□□ 0.61
VCANP13611 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.85■□□□□ 0.61
VCANP13611 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.85■□□□□ 0.61
VCANP13611 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
VCANP13611 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VCANP13611 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms