Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 AL512604.3-201ENST00000569583 964 ntBASIC21.26■□□□□ 0.99
CTDNEP1O95476 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 AL023973.1-201ENST00000624619 620 ntBASIC21.26■□□□□ 0.99
CTDNEP1O95476 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 AC073508.3-201ENST00000619697 1419 ntBASIC21.26■□□□□ 0.99
CTDNEP1O95476 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTDNEP1O95476 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTDNEP1O95476 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTDNEP1O95476 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTDNEP1O95476 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTDNEP1O95476 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CTDNEP1O95476 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.25■□□□□ 0.99
CTDNEP1O95476 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.25■□□□□ 0.99
CTDNEP1O95476 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
CTDNEP1O95476 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.25■□□□□ 0.99
CTDNEP1O95476 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.25■□□□□ 0.99
CTDNEP1O95476 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.25■□□□□ 0.99
CTDNEP1O95476 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.25■□□□□ 0.99
CTDNEP1O95476 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.25■□□□□ 0.99
CTDNEP1O95476 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.25■□□□□ 0.99
CTDNEP1O95476 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTDNEP1O95476 FLJ13224-201ENST00000313737 1514 ntBASIC21.24■□□□□ 0.99
CTDNEP1O95476 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTDNEP1O95476 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.24■□□□□ 0.99
CTDNEP1O95476 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 AL441883.1-201ENST00000566170 1045 ntBASIC21.23■□□□□ 0.99
CTDNEP1O95476 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 AC132938.6-201ENST00000623828 1655 ntBASIC21.23■□□□□ 0.99
CTDNEP1O95476 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms