Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 PTGES2-AS1-201ENST00000443493 2100 ntBASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 NMU-202ENST00000505262 693 ntTSL 3 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC34.82■■■■□ 3.17
SHROOM4Q9ULL8 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC34.82■■■■□ 3.17
SHROOM4Q9ULL8 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC34.82■■■■□ 3.16
SHROOM4Q9ULL8 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
SHROOM4Q9ULL8 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
SHROOM4Q9ULL8 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC34.82■■■■□ 3.16
SHROOM4Q9ULL8 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 AC027601.4-201ENST00000611259 610 ntBASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 AC124864.1-201ENST00000623408 392 ntBASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
SHROOM4Q9ULL8 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 MED15P5-201ENST00000423150 992 ntBASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 CAND2-206ENST00000626378 333 ntTSL 5 BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
SHROOM4Q9ULL8 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC34.79■■■■□ 3.16
SHROOM4Q9ULL8 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC34.79■■■■□ 3.16
SHROOM4Q9ULL8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC34.79■■■■□ 3.16
SHROOM4Q9ULL8 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC34.79■■■■□ 3.16
SHROOM4Q9ULL8 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
SHROOM4Q9ULL8 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
SHROOM4Q9ULL8 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC34.79■■■■□ 3.16
SHROOM4Q9ULL8 IMP4-203ENST00000409935 958 ntTSL 5 BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 AC034105.1-201ENST00000563488 319 ntBASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 YBX2P1-201ENST00000394192 760 ntBASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 HIST2H3DP1-201ENST00000401004 416 ntBASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC34.78■■■■□ 3.16
SHROOM4Q9ULL8 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC34.77■■■■□ 3.16
SHROOM4Q9ULL8 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC34.77■■■■□ 3.16
SHROOM4Q9ULL8 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
SHROOM4Q9ULL8 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
SHROOM4Q9ULL8 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC34.77■■■■□ 3.16
SHROOM4Q9ULL8 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC34.77■■■■□ 3.16
SHROOM4Q9ULL8 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC34.77■■■■□ 3.16
SHROOM4Q9ULL8 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC34.76■■■■□ 3.16
SHROOM4Q9ULL8 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC34.76■■■■□ 3.16
SHROOM4Q9ULL8 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.16
SHROOM4Q9ULL8 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC34.76■■■■□ 3.16
SHROOM4Q9ULL8 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC34.76■■■■□ 3.15
SHROOM4Q9ULL8 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC34.76■■■■□ 3.15
SHROOM4Q9ULL8 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC34.76■■■■□ 3.15
SHROOM4Q9ULL8 DNAJB3-201ENST00000446806 729 ntBASIC34.76■■■■□ 3.15
SHROOM4Q9ULL8 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC34.76■■■■□ 3.15
SHROOM4Q9ULL8 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.15
SHROOM4Q9ULL8 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC34.76■■■■□ 3.15
SHROOM4Q9ULL8 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC34.76■■■■□ 3.15
SHROOM4Q9ULL8 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC34.76■■■■□ 3.15
SHROOM4Q9ULL8 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.15
SHROOM4Q9ULL8 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.15
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms