Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VTA1Q9NP79 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.52■□□□□ 0.88
VTA1Q9NP79 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VTA1Q9NP79 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.52■□□□□ 0.88
VTA1Q9NP79 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.52■□□□□ 0.88
VTA1Q9NP79 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.52■□□□□ 0.88
VTA1Q9NP79 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.52■□□□□ 0.88
VTA1Q9NP79 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.52■□□□□ 0.88
VTA1Q9NP79 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VTA1Q9NP79 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
VTA1Q9NP79 BX640515.1-201ENST00000617215 977 ntBASIC20.52■□□□□ 0.88
VTA1Q9NP79 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VTA1Q9NP79 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VTA1Q9NP79 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VTA1Q9NP79 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
VTA1Q9NP79 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
VTA1Q9NP79 AIRN-201ENST00000601203 4374 ntBASIC20.52■□□□□ 0.87
VTA1Q9NP79 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.52■□□□□ 0.87
VTA1Q9NP79 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
VTA1Q9NP79 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.51■□□□□ 0.87
VTA1Q9NP79 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.51■□□□□ 0.87
VTA1Q9NP79 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.51■□□□□ 0.87
VTA1Q9NP79 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.51■□□□□ 0.87
VTA1Q9NP79 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
VTA1Q9NP79 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
VTA1Q9NP79 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VTA1Q9NP79 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.51■□□□□ 0.87
VTA1Q9NP79 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
VTA1Q9NP79 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
VTA1Q9NP79 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VTA1Q9NP79 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VTA1Q9NP79 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.5■□□□□ 0.87
VTA1Q9NP79 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
VTA1Q9NP79 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VTA1Q9NP79 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VTA1Q9NP79 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VTA1Q9NP79 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
VTA1Q9NP79 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.5■□□□□ 0.87
VTA1Q9NP79 RCN1P2-201ENST00000398357 915 ntBASIC20.5■□□□□ 0.87
VTA1Q9NP79 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.5■□□□□ 0.87
VTA1Q9NP79 FAM197Y8-203ENST00000450145 560 ntBASIC20.5■□□□□ 0.87
VTA1Q9NP79 AC132008.2-207ENST00000454517 770 ntBASIC20.5■□□□□ 0.87
VTA1Q9NP79 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.5■□□□□ 0.87
VTA1Q9NP79 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.5■□□□□ 0.87
VTA1Q9NP79 RNA5SP419-201ENST00000515908 135 ntBASIC20.5■□□□□ 0.87
VTA1Q9NP79 AP001005.1-201ENST00000571755 1248 ntBASIC20.5■□□□□ 0.87
VTA1Q9NP79 AL773604.1-201ENST00000617417 272 ntBASIC20.5■□□□□ 0.87
VTA1Q9NP79 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VTA1Q9NP79 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VTA1Q9NP79 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
VTA1Q9NP79 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.5■□□□□ 0.87
VTA1Q9NP79 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VTA1Q9NP79 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VTA1Q9NP79 TP73-AS1-210ENST00000637775 1455 ntBASIC20.5■□□□□ 0.87
VTA1Q9NP79 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 KRT18P67-201ENST00000432816 1264 ntBASIC20.49■□□□□ 0.87
VTA1Q9NP79 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 AC120114.3-201ENST00000611923 658 ntBASIC20.49■□□□□ 0.87
VTA1Q9NP79 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VTA1Q9NP79 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.49■□□□□ 0.87
VTA1Q9NP79 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VTA1Q9NP79 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.48■□□□□ 0.87
VTA1Q9NP79 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VTA1Q9NP79 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.48■□□□□ 0.87
VTA1Q9NP79 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VTA1Q9NP79 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VTA1Q9NP79 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.48■□□□□ 0.87
VTA1Q9NP79 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.48■□□□□ 0.87
VTA1Q9NP79 AC099343.3-201ENST00000605834 2503 ntBASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms