Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 AP003097.1-201ENST00000530657 1135 ntBASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 AC126763.1-201ENST00000552015 2118 ntBASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CHMP1AQ9HD42 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CHMP1AQ9HD42 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.83■□□□□ 0.13
CHMP1AQ9HD42 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CHMP1AQ9HD42 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
CHMP1AQ9HD42 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC15.83■□□□□ 0.13
CHMP1AQ9HD42 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CHMP1AQ9HD42 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
CHMP1AQ9HD42 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CHMP1AQ9HD42 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC15.83■□□□□ 0.13
CHMP1AQ9HD42 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 GAS7-202ENST00000396115 929 ntTSL 5 BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 AC239809.2-201ENST00000415381 517 ntBASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 AC092666.2-201ENST00000613287 246 ntBASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CHMP1AQ9HD42 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 KRASP1-201ENST00000407852 552 ntBASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 AC069544.1-201ENST00000609399 999 ntBASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 FLJ16779-201ENST00000612722 7638 ntBASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 AC008764.6-201ENST00000595909 2069 ntBASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHMP1AQ9HD42 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms