Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 CASK-202ENST00000378158 3848 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 HBZP1-201ENST00000354915 429 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 RASA4DP-201ENST00000460726 1199 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 TPSP2-201ENST00000561760 610 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ATP5G2P1-201ENST00000433580 426 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 KRT17P6-201ENST00000453795 1220 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 F11R-206ENST00000621309 4770 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AL162741.1-201ENST00000565563 1558 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC246785.2-201ENST00000432512 513 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC091304.2-201ENST00000564639 760 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms