Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 MYLKP1-201ENST00000509077 1580 ntBASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
USHBP1Q8N6Y0 AC243591.1-201ENST00000452967 1364 ntBASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 AL031284.1-201ENST00000419297 478 ntBASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 AC113404.2-201ENST00000507884 177 ntBASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USHBP1Q8N6Y0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 TP73-AS1-210ENST00000637775 1455 ntBASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 MED22-202ENST00000371999 987 ntTSL 3 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 DDT-203ENST00000403754 569 ntTSL 3 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 DDT-206ENST00000430101 573 ntTSL 2 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 KRT18P67-201ENST00000432816 1264 ntBASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USHBP1Q8N6Y0 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.46
USHBP1Q8N6Y0 ADM-207ENST00000530439 1839 ntTSL 2 BASIC24.14■■□□□ 1.46
USHBP1Q8N6Y0 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
USHBP1Q8N6Y0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
USHBP1Q8N6Y0 LINC01126-201ENST00000623515 1646 ntBASIC24.14■■□□□ 1.46
USHBP1Q8N6Y0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.46
USHBP1Q8N6Y0 LINC00602-201ENST00000629776 2065 ntBASIC24.14■■□□□ 1.46
USHBP1Q8N6Y0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
USHBP1Q8N6Y0 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 MIR7706-201ENST00000613747 67 ntBASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC24.14■■□□□ 1.45
USHBP1Q8N6Y0 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USHBP1Q8N6Y0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms