Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC24.41■■□□□ 1.5
USP54Q70EL1 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC24.41■■□□□ 1.5
USP54Q70EL1 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC24.41■■□□□ 1.5
USP54Q70EL1 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC24.41■■□□□ 1.5
USP54Q70EL1 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP54Q70EL1 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP54Q70EL1 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP54Q70EL1 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
USP54Q70EL1 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
USP54Q70EL1 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC24.41■■□□□ 1.5
USP54Q70EL1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC24.41■■□□□ 1.5
USP54Q70EL1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
USP54Q70EL1 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP54Q70EL1 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP54Q70EL1 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP54Q70EL1 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP54Q70EL1 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USP54Q70EL1 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
USP54Q70EL1 KIRREL3-AS3-201ENST00000404882 831 ntBASIC24.4■■□□□ 1.5
USP54Q70EL1 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC24.4■■□□□ 1.5
USP54Q70EL1 AC021087.4-201ENST00000563761 564 ntBASIC24.4■■□□□ 1.5
USP54Q70EL1 AC025062.2-201ENST00000605477 670 ntBASIC24.4■■□□□ 1.5
USP54Q70EL1 PRKN-208ENST00000610470 531 ntTSL 2 BASIC24.4■■□□□ 1.5
USP54Q70EL1 PRKN-209ENST00000612485 225 ntTSL 5 BASIC24.4■■□□□ 1.5
USP54Q70EL1 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USP54Q70EL1 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP54Q70EL1 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP54Q70EL1 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC24.4■■□□□ 1.5
USP54Q70EL1 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
USP54Q70EL1 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP54Q70EL1 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC24.4■■□□□ 1.5
USP54Q70EL1 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC24.4■■□□□ 1.5
USP54Q70EL1 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC24.4■■□□□ 1.5
USP54Q70EL1 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP54Q70EL1 PTGES2-AS1-201ENST00000443493 2100 ntBASIC24.39■■□□□ 1.5
USP54Q70EL1 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC24.39■■□□□ 1.5
USP54Q70EL1 AC093010.1-201ENST00000473625 1624 ntBASIC24.39■■□□□ 1.5
USP54Q70EL1 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP54Q70EL1 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP54Q70EL1 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
USP54Q70EL1 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
USP54Q70EL1 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC24.39■■□□□ 1.49
USP54Q70EL1 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
USP54Q70EL1 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC24.39■■□□□ 1.49
USP54Q70EL1 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC24.39■■□□□ 1.49
USP54Q70EL1 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC24.39■■□□□ 1.49
USP54Q70EL1 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC24.39■■□□□ 1.49
USP54Q70EL1 AC012640.2-201ENST00000561606 901 ntBASIC24.39■■□□□ 1.49
USP54Q70EL1 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC24.39■■□□□ 1.49
USP54Q70EL1 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
USP54Q70EL1 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
USP54Q70EL1 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC24.39■■□□□ 1.49
USP54Q70EL1 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
USP54Q70EL1 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
USP54Q70EL1 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP54Q70EL1 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC24.38■■□□□ 1.49
USP54Q70EL1 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC24.38■■□□□ 1.49
USP54Q70EL1 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP54Q70EL1 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
USP54Q70EL1 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC24.38■■□□□ 1.49
USP54Q70EL1 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC24.38■■□□□ 1.49
USP54Q70EL1 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC24.38■■□□□ 1.49
USP54Q70EL1 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP54Q70EL1 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC24.38■■□□□ 1.49
USP54Q70EL1 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC24.38■■□□□ 1.49
USP54Q70EL1 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC24.38■■□□□ 1.49
USP54Q70EL1 MTDHP3-201ENST00000594186 672 ntBASIC24.38■■□□□ 1.49
USP54Q70EL1 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
USP54Q70EL1 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP54Q70EL1 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP54Q70EL1 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP54Q70EL1 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC24.38■■□□□ 1.49
USP54Q70EL1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
USP54Q70EL1 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
USP54Q70EL1 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC24.38■■□□□ 1.49
USP54Q70EL1 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP54Q70EL1 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
USP54Q70EL1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP54Q70EL1 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
USP54Q70EL1 CSF3-203ENST00000394148 622 ntTSL 3 BASIC24.37■■□□□ 1.49
USP54Q70EL1 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC24.37■■□□□ 1.49
USP54Q70EL1 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC24.37■■□□□ 1.49
USP54Q70EL1 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC24.37■■□□□ 1.49
USP54Q70EL1 PNMT-203ENST00000581428 677 ntTSL 2 BASIC24.37■■□□□ 1.49
USP54Q70EL1 GPALPP1-207ENST00000611650 899 ntBASIC24.37■■□□□ 1.49
USP54Q70EL1 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC24.37■■□□□ 1.49
USP54Q70EL1 FAM215A-202ENST00000632077 792 ntBASIC24.37■■□□□ 1.49
USP54Q70EL1 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC24.37■■□□□ 1.49
USP54Q70EL1 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC24.37■■□□□ 1.49
USP54Q70EL1 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
USP54Q70EL1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC24.37■■□□□ 1.49
USP54Q70EL1 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC24.37■■□□□ 1.49
USP54Q70EL1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC24.37■■□□□ 1.49
USP54Q70EL1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
USP54Q70EL1 AC007967.3-201ENST00000434308 558 ntBASIC24.37■■□□□ 1.49
USP54Q70EL1 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC24.37■■□□□ 1.49
USP54Q70EL1 AC034105.1-201ENST00000563488 319 ntBASIC24.37■■□□□ 1.49
USP54Q70EL1 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC24.37■■□□□ 1.49
USP54Q70EL1 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
USP54Q70EL1 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms