Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC023511.2-201ENST00000618803 211 ntBASIC15.79■□□□□ 0.12
USF3Q68DE3 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
USF3Q68DE3 HOXB1-202ENST00000577092 1414 ntBASIC15.79■□□□□ 0.12
USF3Q68DE3 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.79■□□□□ 0.12
USF3Q68DE3 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
USF3Q68DE3 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC15.79■□□□□ 0.12
USF3Q68DE3 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15.79■□□□□ 0.12
USF3Q68DE3 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
USF3Q68DE3 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
USF3Q68DE3 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 KRT18P23-201ENST00000435622 1283 ntBASIC15.78■□□□□ 0.12
USF3Q68DE3 AP000347.1-202ENST00000435868 847 ntBASIC15.78■□□□□ 0.12
USF3Q68DE3 NUS1P1-201ENST00000446295 882 ntBASIC15.78■□□□□ 0.12
USF3Q68DE3 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC15.78■□□□□ 0.12
USF3Q68DE3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
USF3Q68DE3 AL109659.2-201ENST00000606809 1674 ntBASIC15.78■□□□□ 0.12
USF3Q68DE3 Z83836.1-201ENST00000624605 1642 ntBASIC15.78■□□□□ 0.12
USF3Q68DE3 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.78■□□□□ 0.12
USF3Q68DE3 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
USF3Q68DE3 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC15.78■□□□□ 0.12
USF3Q68DE3 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.78■□□□□ 0.12
USF3Q68DE3 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
USF3Q68DE3 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
USF3Q68DE3 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.78■□□□□ 0.12
USF3Q68DE3 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC15.78■□□□□ 0.12
USF3Q68DE3 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.78■□□□□ 0.12
USF3Q68DE3 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.78■□□□□ 0.12
USF3Q68DE3 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.78■□□□□ 0.12
USF3Q68DE3 IL11-204ENST00000590625 1028 ntTSL 2 BASIC15.78■□□□□ 0.12
USF3Q68DE3 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF3Q68DE3 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.77■□□□□ 0.12
USF3Q68DE3 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.77■□□□□ 0.12
USF3Q68DE3 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
USF3Q68DE3 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC15.77■□□□□ 0.12
USF3Q68DE3 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
USF3Q68DE3 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
USF3Q68DE3 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
USF3Q68DE3 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
USF3Q68DE3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.77■□□□□ 0.12
USF3Q68DE3 AP002469.2-201ENST00000531724 424 ntBASIC15.77■□□□□ 0.12
USF3Q68DE3 TEN1-204ENST00000588202 862 ntTSL 3 BASIC15.77■□□□□ 0.12
USF3Q68DE3 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.77■□□□□ 0.12
USF3Q68DE3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
USF3Q68DE3 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.77■□□□□ 0.11
USF3Q68DE3 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
USF3Q68DE3 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
USF3Q68DE3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC15.77■□□□□ 0.11
USF3Q68DE3 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.77■□□□□ 0.11
USF3Q68DE3 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC15.77■□□□□ 0.11
USF3Q68DE3 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
USF3Q68DE3 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC15.77■□□□□ 0.11
USF3Q68DE3 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
USF3Q68DE3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
USF3Q68DE3 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
USF3Q68DE3 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
USF3Q68DE3 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC15.76■□□□□ 0.11
USF3Q68DE3 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.76■□□□□ 0.11
USF3Q68DE3 AL160237.2-201ENST00000556165 472 ntBASIC15.76■□□□□ 0.11
USF3Q68DE3 CIB2-208ENST00000560618 804 ntTSL 2 BASIC15.76■□□□□ 0.11
USF3Q68DE3 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.76■□□□□ 0.11
USF3Q68DE3 SLC25A6P4-201ENST00000586535 553 ntBASIC15.76■□□□□ 0.11
USF3Q68DE3 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
USF3Q68DE3 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC15.76■□□□□ 0.11
USF3Q68DE3 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC15.76■□□□□ 0.11
USF3Q68DE3 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 LINC00265-3P-201ENST00000447588 903 ntBASIC15.76■□□□□ 0.11
USF3Q68DE3 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.76■□□□□ 0.11
USF3Q68DE3 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.76■□□□□ 0.11
USF3Q68DE3 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.76■□□□□ 0.11
USF3Q68DE3 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.76■□□□□ 0.11
USF3Q68DE3 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
USF3Q68DE3 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
USF3Q68DE3 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.76■□□□□ 0.11
USF3Q68DE3 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
USF3Q68DE3 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
USF3Q68DE3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
USF3Q68DE3 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms