Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD3Q3KNS1 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 TSPY5P-201ENST00000426936 936 ntBASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 AC092647.4-201ENST00000457211 535 ntBASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 LINC01238-205ENST00000567549 1107 ntBASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 AC007613.1-201ENST00000572811 2597 ntBASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 HOXB1-202ENST00000577092 1414 ntBASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
PTCHD3Q3KNS1 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 KRT18P23-201ENST00000435622 1283 ntBASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 AC140113.3-201ENST00000605663 199 ntBASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 AC099343.3-201ENST00000605834 2503 ntBASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.96■□□□□ 0.47
PTCHD3Q3KNS1 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.46
PTCHD3Q3KNS1 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 AL390961.4-201ENST00000623958 2535 ntBASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 KRT8P7-201ENST00000533003 1432 ntBASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms